CX290884

Overview
NameCX290884
Unique NameCX290884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8343 contig Ccv1_Contig8343:1019..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: INDY2_DROME (Protein I'm not dead yet 2 OS=Drosophila melanogaster GN=Indy-2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.193e-18
Identity = 48/178 (26.97%), Postives = 86/178 (48.31%), Query Frame = 2
Query:   26 IPGWGALFNDRA-GDGTASVVMATLLFIIPSM--------------KQKGEKLMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIE 511
            +PGW  L N +  G  +    +  L+F +P+                Q  + ++ W    + +PW ++ LLG GFA+A   R +GL   +SKA+  L   P + +  I  +++   + F +N     +VLP+L +++  + +HPL+L +P  +G    + LP  TP N +     HI+
Sbjct:  335 VPGWSDLINRKVVGSASGLSFIVLLIFALPTQYTFFKYCCGKGPFTAQAIDAILSWEYVLRNIPWGLLFLLGGGFALAVASRETGLNIMISKAMQVLIGLPNIVVQSITFVLANFFSAFNANVVVANIVLPILCEMSLALELHPLILTLPACLGISMVYFLPVSTPPNAIVTQYAHIK 512          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: Y608_HAEIN (Uncharacterized transporter HI0608 OS=Haemophilus influenzae GN=HI0608 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 37/123 (30.08%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  170 WNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            W +++L G G  ++  ++ SG +  L+ ++ F+ +   +  I  +V      +TEFTSN A+  L++P+ I IA+++ +  + L +   IGA  +F+LP  TP N + F +G ++  +M+K G
Sbjct:  318 WGVLMLFGGGLTLSAVLKDSGASKILADSIVFMIDGQHFYLIGLLVAAFIIFLTEFTSNTASAALLVPIFISIAQSLGMPEIGLALIIGIGASCAFMLPVATPPNAIVFGSGQVKQSEMVKVG 440          
The following BLAST results are available for this feature:
BLAST of CX290884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
INDY2_DROME3.193e-1826.97Protein I'm not dead yet 2 OS=Drosophila melanogas... [more]
Y608_HAEIN1.813e-1330.08Uncharacterized transporter HI0608 OS=Haemophilus ... [more]

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Properties
Property NameValue
Genbank descriptionC03001C09Rv OF1 Citrus clementina cDNA clone C03001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290884 ID=CX290884; Name=CX290884; organism=Citrus clementina; type=EST; length=535bp
GATGACAAGATCAATAACAGATGACATTCCAGGTTGGGGAGCACTCTTCA
ATGACCGTGCTGGTGATGGAACTGCTAGTGTTGTGATGGCAACATTGTTG
TTCATAATTCCGAGCATGAAGCAAAAGGGAGAAAAATTGATGGATTGGAA
CAAATGCAAGAAGCTACCTTGGAACATTATATTGCTTTTAGGGGCTGGCT
TTGCTATAGCTGATGGAGTCAGGACTAGCGGTCTTGCTGATGATCTGTCA
AAAGCATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATTGCACCTAT
CGTATGTCTGATTAGCGCGATTATTACTGAATTCACATCAAATAATGCCA
CAACAACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAACTATGCAT
GTTCATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTTTC
TTTCTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAACCG
GGCACATCGAAATTCAAGATATGATCAAGACAGGG
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