CX290930 | Citrus Genome Database

Overview


Name	CX290930
Unique Name	CX290930
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	408

Libraries


Library Name	Type
OF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKL 364

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKL 364

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKL 364

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKL
Sbjct:  290 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKL 363

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKL
Sbjct:  280 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKL 353

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKL
Sbjct:  286 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKL 359

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKL 364

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP90_ASPFU (Heat shock protein 90 OS=Aspergillus fumigatus GN=hsp90 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.262e-30
Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P +IT+EEYA+FYKSL+NDWE+HLAVKHFSVEGQLEF+AIL+VPKRAPFDLF+T+K  NNIKL
Sbjct:  267 LNKTKPIWTRNPADITQEEYASFYKSLSNDWEDHLAVKHFSVEGQLEFRAILYVPKRAPFDLFETKKTKNNIKL 340

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 355

[Close]

BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3

Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 355

The following BLAST results are available for this feature:

BLAST of CX290930 vs. ExPASy Swiss-Prot

BLAST of CX290930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223


Match Name	E-value	Identity	Description
HS90A_PIG	2.499e-30	78.38	Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H...	[more]
HS90A_PANTR	2.499e-30	78.38	Heat shock protein HSP 90-alpha OS=Pan troglodytes...	[more]
HS90A_MACFA	2.499e-30	78.38	Heat shock protein HSP 90-alpha OS=Macaca fascicul...	[more]
HS90A_HUMAN	2.499e-30	78.38	Heat shock protein HSP 90-alpha OS=Homo sapiens GN...	[more]
HS90A_HORSE	2.499e-30	78.38	Heat shock protein HSP 90-alpha (Fragment) OS=Equu...	[more]
HS90A_CHICK	2.499e-30	78.38	Heat shock protein HSP 90-alpha OS=Gallus gallus G...	[more]
HS90A_BOVIN	2.499e-30	78.38	Heat shock protein HSP 90-alpha OS=Bos taurus GN=H...	[more]
HSP90_ASPFU	4.262e-30	78.38	Heat shock protein 90 OS=Aspergillus fumigatus GN=...	[more]
HS90B_RAT	5.566e-30	75.68	Heat shock protein HSP 90-beta OS=Rattus norvegicu...	[more]
HS90B_PONAB	5.566e-30	75.68	Heat shock protein HSP 90-beta OS=Pongo abelii GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C03001H06Rv OF1 Citrus clementina cDNA clone C03001H06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX290930 ID=CX290930; Name=CX290930; organism=Citrus clementina; type=EST; length=408bp
CTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGACCACTGAG
AAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATGAGGAGGG
TAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAGAAGAAGA
AGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAAGCAGAAA
CCCATTTGGATGAGGAAACCCGAGGAGATTACAAAAGAAGAGTATGCTGC
CTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCTGTGAAGC
ACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTTTGTTCCC
AAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACAT
CAAGCTCT