CX290930

Overview
NameCX290930
Unique NameCX290930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_COXBU (Chaperone protein htpG OS=Coxiella burnetii GN=htpG PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            E  +VN+   +W+   ++I  EEY   YK + +D+E+ LA  H  VEG+LE+  +L++P RAPFDL++ R+    +KL
Sbjct:  231 EEEVVNRANALWVLPKDKIKDEEYKELYKHIAHDFEDPLAWVHNKVEGKLEYTTLLYIPARAPFDLWN-REGQRGLKL 307
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_COXBR (Chaperone protein htpG OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=htpG PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            E  +VN+   +W+   ++I  EEY   YK + +D+E+ LA  H  VEG+LE+  +L++P RAPFDL++ R+    +KL
Sbjct:  231 EEEVVNRANALWVLPKDKIKDEEYKELYKHIAHDFEDPLAWVHNKVEGKLEYTTLLYIPARAPFDLWN-REGQRGLKL 307
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLE 326
            +N+ KPIW R P++IT+EE   FYKSLT+ WE+HLAVK F VE Q E
Sbjct:  255 LNQTKPIWTRNPDDITQEECGEFYKSLTSAWEDHLAVKQFPVEEQEE 301
The following BLAST results are available for this feature:
BLAST of CX290930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
HTPG_COXBU9.871e-1139.74Chaperone protein htpG OS=Coxiella burnetii GN=htp... [more]
HTPG_COXBR9.871e-1139.74Chaperone protein htpG OS=Coxiella burnetii (strai... [more]
H90B4_HUMAN9.871e-1161.70Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC03001H06Rv OF1 Citrus clementina cDNA clone C03001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290930 ID=CX290930; Name=CX290930; organism=Citrus clementina; type=EST; length=408bp
CTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGACCACTGAG
AAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATGAGGAGGG
TAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAGAAGAAGA
AGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAAGCAGAAA
CCCATTTGGATGAGGAAACCCGAGGAGATTACAAAAGAAGAGTATGCTGC
CTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCTGTGAAGC
ACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTTTGTTCCC
AAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACAT
CAAGCTCT
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