CX290930

Overview
NameCX290930
Unique NameCX290930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 355          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 355          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 355          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  283 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 356          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 355          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 9.494e-30
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRAFLFIPRRAPFDLFENKKKKNNIKL 355          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.115e-29
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I+ EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKL
Sbjct:  281 LNKTKPIWTRNPDDISNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKL 354          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.712e-29
Identity = 56/81 (69.14%), Postives = 70/81 (86.42%), Query Frame = 3
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            V+ E+ + NK KP+W R P+++TKEEYAAFYK+++NDWEE L+ KHFSVEGQLEF+AILFVPKRAPFD+F+  KK NNIKL
Sbjct:  258 VTQEFVVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEEPLSTKHFSVEGQLEFRAILFVPKRAPFDMFEPSKKRNNIKL 338          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP82_ASHGO (Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP82 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.154e-29
Identity = 55/74 (74.32%), Postives = 67/74 (90.54%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KP+W R P E+T+EEY AFYKS++NDWE+ LAVKHFSVEGQLEF+AILF+PKRAPFDLF+++KK NNIKL
Sbjct:  265 LNKTKPLWTRNPSEVTQEEYNAFYKSISNDWEDPLAVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKL 338          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_DROVI (Heat shock protein 83 (Fragment) OS=Drosophila virilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.037e-29
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I++EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+R PFDLF+ +KK NNIKL
Sbjct:  274 LNKTKPIWTRNPDDISQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKL 347          
The following BLAST results are available for this feature:
BLAST of CX290930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
HS90B_MACFA5.566e-3075.68Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN5.566e-3075.68Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE5.566e-3075.68Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HS90B_CHICK5.566e-3075.68Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HS90B_BOVIN5.566e-3075.68Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HS90B_MOUSE9.494e-3075.68Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HS90B_DANRE2.115e-2974.32Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
HSP85_TRYCR4.712e-2969.14Heat shock-like 85 kDa protein OS=Trypanosoma cruz... [more]
HSP82_ASHGO6.154e-2974.32Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP... [more]
HSP83_DROVI8.037e-2972.97Heat shock protein 83 (Fragment) OS=Drosophila vir... [more]

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Properties
Property NameValue
Genbank descriptionC03001H06Rv OF1 Citrus clementina cDNA clone C03001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290930 ID=CX290930; Name=CX290930; organism=Citrus clementina; type=EST; length=408bp
CTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGACCACTGAG
AAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATGAGGAGGG
TAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAGAAGAAGA
AGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAAGCAGAAA
CCCATTTGGATGAGGAAACCCGAGGAGATTACAAAAGAAGAGTATGCTGC
CTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCTGTGAAGC
ACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTTTGTTCCC
AAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACAT
CAAGCTCT
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