CX290930

Overview
NameCX290930
Unique NameCX290930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_DROSI (Heat shock protein 83 (Fragment) OS=Drosophila simulans GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.037e-29
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I++EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+R PFDLF+ +KK NNIKL
Sbjct:  275 LNKTKPIWTRNPDDISQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKL 348          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.037e-29
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I++EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+R PFDLF+ +KK NNIKL
Sbjct:  275 LNKTKPIWTRNPDDISQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKL 348          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_DROAV (Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.037e-29
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I++EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+R PFDLF+ +KK NNIKL
Sbjct:  274 LNKTKPIWTRNPDDISQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKL 347          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 54/81 (66.67%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            V  E+ + NK KP+W R P+++TKEEYA+FYK+++NDWEE L+ KHFSVEGQLEF+AILF+PKRAPFD+F+  KK NNIKL
Sbjct:  258 VKQEFVVQNKHKPLWTRDPKDVTKEEYASFYKAISNDWEEQLSTKHFSVEGQLEFRAILFLPKRAPFDMFEPNKKRNNIKL 338          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_LEIDO (Heat shock protein 83 (Fragment) OS=Leishmania donovani GN=HSP83 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 53/81 (65.43%), Postives = 70/81 (86.42%), Query Frame = 3
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            V+ E+ + NK KP+W R P+++TKEEYAAFYK+++NDWE+ +A KHFSVEGQLEF++I+FVPKRAPFD+F+  KK NNIKL
Sbjct:    7 VTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPMATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKL 87          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.791e-28
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 3
Query:  171 HEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            HE   +NK KPIW R P++I+ EEYA FYKSL+NDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ +K  N IKL
Sbjct:  267 HEDEELNKTKPIWTRNPDDISNEEYAEFYKSLSNDWEDHLAVKHFSVEGQLEFRALLFVPQRAPFDLFENKKTKNAIKL 345          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP82_AJECA (Heat shock protein 82 OS=Ajellomyces capsulata GN=HSP82 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.791e-28
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P +IT+EEYA+FYK  TNDWE+HLAVKHFSVEGQLEF+AILFVPKRAPFDLF+T+K  NNIKL
Sbjct:  265 LNKTKPIWTRNPADITQEEYASFYK--TNDWEDHLAVKHFSVEGQLEFRAILFVPKRAPFDLFETKKTKNNIKL 336          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: H90A1_DANRE (Heat shock protein HSP 90-alpha 1 OS=Danio rerio GN=hsp90a.1 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 1.791e-28
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++IT EEY  FYKSL+NDWE+HLAVKHFSVEGQLEF+A+LFVP+RA FDLF+ +KK NNIKL
Sbjct:  283 LNKTKPIWTRNPDDITNEEYGEFYKSLSNDWEDHLAVKHFSVEGQLEFRALLFVPRRAAFDLFENKKKRNNIKL 356          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.339e-28
Identity = 53/74 (71.62%), Postives = 65/74 (87.84%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I++EEY  FYKSLTNDWE+HL VKHFSVEGQLEF+A+LF+P+R PFDLF+ +KK NNIKL
Sbjct:  275 LNKTKPIWTRNPDDISQEEYGEFYKSLTNDWEDHLCVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKL 348          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.054e-28
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I+ EEYA FYKSL+NDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ +K  N+IKL
Sbjct:  261 LNKTKPIWTRNPDDISNEEYAEFYKSLSNDWEDHLAVKHFSVEGQLEFRALLFVPQRAPFDLFENKKSKNSIKL 334          
The following BLAST results are available for this feature:
BLAST of CX290930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
HSP83_DROSI8.037e-2972.97Heat shock protein 83 (Fragment) OS=Drosophila sim... [more]
HSP83_DROME8.037e-2972.97Heat shock protein 83 OS=Drosophila melanogaster G... [more]
HSP83_DROAV8.037e-2972.97Heat shock protein 83 OS=Drosophila auraria GN=Hsp... [more]
HSP83_TRYBB1.371e-2866.67Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HSP83_LEIDO1.371e-2865.43Heat shock protein 83 (Fragment) OS=Leishmania don... [more]
HSP90_BRUPA1.791e-2870.89Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP82_AJECA1.791e-2878.38Heat shock protein 82 OS=Ajellomyces capsulata GN=... [more]
H90A1_DANRE1.791e-2874.32Heat shock protein HSP 90-alpha 1 OS=Danio rerio G... [more]
HSP83_DROPS2.339e-2871.62Heat shock protein 83 OS=Drosophila pseudoobscura ... [more]
HSP90_CAEEL3.054e-2872.97Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionC03001H06Rv OF1 Citrus clementina cDNA clone C03001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290930 ID=CX290930; Name=CX290930; organism=Citrus clementina; type=EST; length=408bp
CTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGACCACTGAG
AAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATGAGGAGGG
TAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAGAAGAAGA
AGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAAGCAGAAA
CCCATTTGGATGAGGAAACCCGAGGAGATTACAAAAGAAGAGTATGCTGC
CTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCTGTGAAGC
ACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTTTGTTCCC
AAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACAT
CAAGCTCT
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