CX290930

Overview
NameCX290930
Unique NameCX290930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.989e-28
Identity = 53/81 (65.43%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            V+ E+ + NK KP+W R P+++TKEEYAAFYK+++NDWE+  A KHFSVEGQLEF++I+FVPKRAPFD+F+  KK NNIKL
Sbjct:  254 VTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPRATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKL 334          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP82_YEAST (ATP-dependent molecular chaperone HSP82 OS=Saccharomyces cerevisiae GN=HSP82 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.210e-28
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KP+W R P +IT+EEY AFYKS++NDWE+ L VKHFSVEGQLEF+AILF+PKRAPFDLF+++KK NNIKL
Sbjct:  270 LNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKL 343          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSC82_YEAST (ATP-dependent molecular chaperone HSC82 OS=Saccharomyces cerevisiae GN=HSC82 PE=1 SV=4)

HSP 1 Score: 122.865 bits (307), Expect = 5.210e-28
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KP+W R P +IT+EEY AFYKS++NDWE+ L VKHFSVEGQLEF+AILF+PKRAPFDLF+++KK NNIKL
Sbjct:  266 LNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKL 339          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP90_CANAL (Heat shock protein 90 homolog OS=Candida albicans GN=HSP90 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.804e-28
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KP+W R P +IT++EY AFYKS++NDWE+ LAVKHFSVEGQLEF+AILFVPKRAPFD F+++KK NNIKL
Sbjct:  267 LNKTKPLWTRNPSDITQDEYNAFYKSISNDWEDPLAVKHFSVEGQLEFRAILFVPKRAPFDAFESKKKKNNIKL 340          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.886e-28
Identity = 53/74 (71.62%), Postives = 65/74 (87.84%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R P++I+ EEYA FYKSL+NDWE+HLAVKHFSVEGQLEF+A+LF P+RAPFDLF+ +K  N+IKL
Sbjct:  265 LNKTKPIWTRNPDDISNEEYAEFYKSLSNDWEDHLAVKHFSVEGQLEFRALLFAPQRAPFDLFENKKSKNSIKL 338          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_ANOGA (Heat shock protein 83 OS=Anopheles gambiae GN=Hsp83 PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 8.886e-28
Identity = 53/74 (71.62%), Postives = 65/74 (87.84%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            +NK KPIW R  ++I++EEY  FYKSLTNDWE+HLAVKHFSVEGQL+F+A+LFVP+R PFDLF+ +KK NNIKL
Sbjct:  270 LNKTKPIWTRNADDISQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLDFRALLFVPRRMPFDLFENKKKKNNIKL 343          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.161e-27
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 3
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            V+ E+ + NK KP+W R P+++TKEEYAAFYK+++NDWE+  A KHFSVEGQLEF+AI+FVPKRAPFD+ +  KK NNIKL
Sbjct:  255 VTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPPATKHFSVEGQLEFRAIMFVPKRAPFDMLEPNKKRNNIKL 335          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: H90B3_HUMAN (Putative heat shock protein HSP 90-beta-3 OS=Homo sapiens GN=HSP90AB3P PE=5 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.516e-22
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 3
Query:  222 EEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EE   +EY  FYKSLT+DWE+HLAVKHFSVEGQLEF+A+LF P+RAPFDLF+ +KK NNIKL
Sbjct:  236 EEDDSKEYGEFYKSLTSDWEDHLAVKHFSVEGQLEFRALLFSPRRAPFDLFENKKKKNNIKL 297          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS902_HUMAN (Putative heat shock protein HSP 90-alpha A2 OS=Homo sapiens GN=HSP90AA2 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.519e-19
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 3
Query:  186 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVP 350
            +NK KPIW R P++IT EEY  F K+LTNDWE+HLAVKHFSVEGQLEF+A+LFVP
Sbjct:  289 LNKTKPIWTRNPDDITNEEYGEFCKNLTNDWEDHLAVKHFSVEGQLEFRALLFVP 343          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.337e-18
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 3
Query:  240 EYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EY  FYKSLT +WE++LAVKHFSVEGQLEF+A LFVP+ APF+L +TRKK N IKL
Sbjct:  112 EYREFYKSLTINWEDYLAVKHFSVEGQLEFRAFLFVPRLAPFELLETRKKKNKIKL 167          
The following BLAST results are available for this feature:
BLAST of CX290930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
HSP83_LEIIN3.989e-2865.43Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]
HSP82_YEAST5.210e-2872.97ATP-dependent molecular chaperone HSP82 OS=Sacchar... [more]
HSC82_YEAST5.210e-2872.97ATP-dependent molecular chaperone HSC82 OS=Sacchar... [more]
HSP90_CANAL6.804e-2872.97Heat shock protein 90 homolog OS=Candida albicans ... [more]
HSP90_CAEBR8.886e-2871.62Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HSP83_ANOGA8.886e-2871.62Heat shock protein 83 OS=Anopheles gambiae GN=Hsp8... [more]
HSP83_LEIAM1.161e-2765.43Heat shock protein 83 OS=Leishmania amazonensis GN... [more]
H90B3_HUMAN9.516e-2274.19Putative heat shock protein HSP 90-beta-3 OS=Homo ... [more]
HS902_HUMAN1.519e-1974.55Putative heat shock protein HSP 90-alpha A2 OS=Hom... [more]
HS904_HUMAN8.337e-1873.21Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC03001H06Rv OF1 Citrus clementina cDNA clone C03001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290930 ID=CX290930; Name=CX290930; organism=Citrus clementina; type=EST; length=408bp
CTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGACCACTGAG
AAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATGAGGAGGG
TAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAGAAGAAGA
AGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAAGCAGAAA
CCCATTTGGATGAGGAAACCCGAGGAGATTACAAAAGAAGAGTATGCTGC
CTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCTGTGAAGC
ACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTTTGTTCCC
AAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACAT
CAAGCTCT
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