CX290930

Overview
NameCX290930
Unique NameCX290930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_AERS4 (Chaperone protein htpG OS=Aeromonas salmonicida (strain A449) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.538e-14
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EW  VN+   +W R P+EI  EEY  FYK + +D+E+ L   H  VEG  E+ ++L+VP RAPFDL++ R++ + +KL
Sbjct:  234 EWEQVNRATALWTRNPKEIKDEEYQEFYKHVAHDFEDPLLWGHNRVEGAQEYTSLLYVPARAPFDLYN-REQKHGLKL 310          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_BDEBA (Chaperone protein htpG OS=Bdellovibrio bacteriovorus GN=htpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFD 368
            E   +N QK +W++ P E+TKEEY  FY+ LT+DW E L   H+  EG +EF A+L+VP + P++
Sbjct:  217 EEETLNSQKALWLKSPSEVTKEEYKEFYQHLTHDWNEPLRTVHYRAEGTMEFNALLYVPGKKPWN 281          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_SACD2 (Chaperone protein htpG OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=htpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.627e-13
Identity = 29/78 (37.18%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            E+ ++N  K +W R   ++T EEY  FYK +++D+ + L+  H  VEG+L++ +++++P +APFD+++ R+KP  +KL
Sbjct:  230 EYEVINTAKALWARSRSDVTDEEYKEFYKHVSHDYTDPLSWSHNRVEGKLDYTSLIYIPSKAPFDMYN-REKPRGVKL 306          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_AERHH (Chaperone protein htpG OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=htpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.627e-13
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EW  VN+   +W R P+EI  EEY  FYK + +D+E+ L   H  VEG  E+ ++L+VP RAPFDL++ R + + +KL
Sbjct:  238 EWEQVNRATALWTRNPKEIKDEEYQEFYKHVAHDFEDPLLWGHNRVEGAQEYTSLLYVPARAPFDLYN-RDQKHGLKL 314          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_ACISJ (Chaperone protein htpG OS=Acidovorax sp. (strain JS42) GN=htpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.627e-13
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK 389
            EW  VNK   +W R  ++IT E+Y  FYKS+++D+E  L   H  VEG  E+  +L++P +APFDL++  KK
Sbjct:  231 EWETVNKASALWTRPKKDITDEQYQDFYKSISHDFENPLTWSHNRVEGNTEYTQLLYIPAKAPFDLWNRDKK 302          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.627e-13
Identity = 28/79 (35.44%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  171 HEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            ++W  +N  KP+WM+  +++TKEEY  F++SL+   +  +   HF  EG  EF++IL++P+  P ++FD     + +KL
Sbjct:  311 YKWEELNDSKPLWMKAAKDVTKEEYTEFFRSLSKTQDTPITYSHFKTEGDTEFRSILYIPENPPSNMFDLEAAGSGLKL 389          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_PSYCK (Chaperone protein htpG OS=Psychrobacter cryohalolentis (strain K5) GN=htpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.125e-13
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            ++ EW  +NK   +W R   EI  EEY  FYK++T D +  LA  H  VEG++++  +L++PK+AP DL+ TR++ + +KL
Sbjct:  258 LTDEWETINKASALWTRSASEIEDEEYIDFYKNITYDMDAPLAWTHNRVEGRVQYTQLLYIPKKAPVDLY-TREQQHGLKL 337          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.125e-13
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EW  VN  + +W R+  +IT EEY  FYK++ +D++E L   H  VEG  E+  +L++PKRAP+DL++ R++ + +KL
Sbjct:  235 EWETVNSGQALWTREKSDITDEEYKEFYKTVAHDFDEPLLWSHNKVEGTTEYTNLLYIPKRAPWDLWN-REQQHGVKL 311          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_GEOSL (Chaperone protein htpG OS=Geobacter sulfurreducens GN=htpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.775e-13
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  174 EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK 389
            E   +N  K IW R   E+T+EEY  FYK +++D+E+ L   H+S EG  EFKA+L++P   PFDLF   +K
Sbjct:  236 EEETLNSMKAIWTRSKSEVTEEEYEEFYKHVSHDFEKPLKTIHYSAEGTSEFKALLYLPAHKPFDLFMPERK 307          
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HTPG_CHRSD (Chaperone protein htpG OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=htpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.775e-13
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  177 WSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            W  VN+   +W+R  EEI+ +EY AFYK + +D+ + L   H  VEG+LE+ ++L+VP RAPFDL+  R+    +KL
Sbjct:  233 WETVNEATALWVRPKEEISDDEYKAFYKHVAHDFSDPLTWSHNKVEGKLEYTSLLYVPGRAPFDLYQ-REGVRGLKL 308          
The following BLAST results are available for this feature:
BLAST of CX290930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
HTPG_AERS49.538e-1444.87Chaperone protein htpG OS=Aeromonas salmonicida (s... [more]
HTPG_BDEBA1.246e-1346.15Chaperone protein htpG OS=Bdellovibrio bacteriovor... [more]
HTPG_SACD21.627e-1337.18Chaperone protein htpG OS=Saccharophagus degradans... [more]
HTPG_AERHH1.627e-1344.87Chaperone protein htpG OS=Aeromonas hydrophila sub... [more]
HTPG_ACISJ1.627e-1344.44Chaperone protein htpG OS=Acidovorax sp. (strain J... [more]
ENPL_DICDI1.627e-1335.44Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
HTPG_PSYCK2.125e-1340.74Chaperone protein htpG OS=Psychrobacter cryohalole... [more]
HTPG_IDILO2.125e-1342.31Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]
HTPG_GEOSL2.775e-1345.83Chaperone protein htpG OS=Geobacter sulfurreducens... [more]
HTPG_CHRSD2.775e-1344.16Chaperone protein htpG OS=Chromohalobacter salexig... [more]

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Properties
Property NameValue
Genbank descriptionC03001H06Rv OF1 Citrus clementina cDNA clone C03001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290930 ID=CX290930; Name=CX290930; organism=Citrus clementina; type=EST; length=408bp
CTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGACCACTGAG
AAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATGAGGAGGG
TAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAGAAGAAGA
AGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAAGCAGAAA
CCCATTTGGATGAGGAAACCCGAGGAGATTACAAAAGAAGAGTATGCTGC
CTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCTGTGAAGC
ACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTTTGTTCCC
AAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACAT
CAAGCTCT
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