CX290934

Overview
NameCX290934
Unique NameCX290934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_ASPFU (Mitochondrial Rho GTPase 1 OS=Aspergillus fumigatus GN=gem1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.189e-28
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    4 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            A  +EE M P+M +F+EI++C+  SA     V + F+  QKAV HP APLFD  E  LKP  V AL+RIF + D D DG L+D E+ +FQ++CF+ PL   ++V +K  +Q+   D V   G+   GF+ L+ ++
Sbjct:  126 AQVIEEEMLPVMAEFKEIDSCIRTSAREHRNVNEAFFLCQKAVTHPIAPLFDSKESALKPAAVAALQRIFYLSDKDRDGYLSDKEIEDFQMRCFDKPLSKEDLVHIKETIQKTHPDSVTPFGIDCRGFIHLNKMY 260          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_GIBZE (Mitochondrial Rho GTPase 1 OS=Gibberella zeae GN=GEM1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.156e-27
Identity = 57/132 (43.18%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   13 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +EE + P+M +FRE+++C+  SA     V +VF+  QKAV HP APLFD+ E  LKP C+ ALKRIF +CD D DG LN+ E+ +FQ +CF+ PL   ++ ++K  + +       + G+ L GFL L+ L+
Sbjct:  128 VEEELLPVMAEFREVDSCIRTSARDHRNVNEVFFLCQKAVTHPIAPLFDYKEGHLKPLCINALKRIFYLCDKDQDGYLNEQEMRDFQARCFDKPLTTDDLDNIKLSIAKSLPASDLEKGIDLPGFLQLNKLY 259          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_EMENI (Mitochondrial Rho GTPase 1 OS=Emericella nidulans GN=gem1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.393e-27
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1
Query:   13 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +E+ M P+M +F+EI++C+  SA     V + F+  QKAV HP APLFD  E  LKP  V AL+RIF + D D DG L+D E+ +FQ++CF  PL   ++V +K  +Q+   D V   G+   GF+ L+ ++
Sbjct:  130 IEDEMLPLMSEFKEIDSCIRTSAREHRNVNEAFFLCQKAVTHPIAPLFDAKESALKPAAVAALQRIFYLSDKDRDGYLSDKEIKDFQMRCFEKPLSEEDLVHIKETIQKTHPDSVTPSGIDCRGFIHLNKMY 261          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_ASPOR (Mitochondrial Rho GTPase 1 OS=Aspergillus oryzae GN=gem1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.786e-27
Identity = 57/135 (42.22%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    4 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            A  +EE M P+M +F+EI++C+  SA     V + F+  QKAV HP APLFD  E  LKP  V AL+RIF + D D DG L+D EL +FQ++CF  PL   ++V +K  +Q+     V   G+   GF+ L+ ++
Sbjct:  126 AQVIEEEMLPLMAEFKEIDSCIRTSAREHRNVNEAFFLCQKAVTHPIAPLFDSKESALKPAAVAALQRIFYLSDKDRDGYLSDKELEDFQMRCFEKPLSEEDLVHIKETIQKTHPTSVAPSGIDCRGFIHLNKMY 260          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_YARLI (Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica GN=GEM1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.564e-23
Identity = 50/132 (37.88%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   13 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            + + M PI+++F+EIE+C+  SA     +   FY  QKAV+HP APLFD  E  LKP  V AL+R+F + D D DG L+D E+ E QVKCF       +++ ++  + +       + G++  GF+ L+ L+
Sbjct:  136 ISDEMIPILREFKEIESCIRVSAKLNHNINQAFYLCQKAVMHPIAPLFDAKEGKLKPNAVAALQRVFFLSDRDQDGYLSDQEMLELQVKCFGRSFDATDLIQIRAQLAKINPALATERGVSEEGFITLNRLY 267          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_ASHGO (Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=GEM1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.872e-20
Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   16 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDG---------VNDLGLTLSGFLFLHALF 408
            +E   PI++ F+E+ETC++CSA   + V   FY  Q+A+ HP APLFD     LKP  ++ALKRIF++ D D D  L+  E+   Q KCF   +   E+  + + + +              V + G+T  GFL L+ ++
Sbjct:  142 DEEFIPILKAFKEVETCIKCSAKNKLNVNQAFYLCQRAITHPLAPLFDARIGELKPLAIQALKRIFVLSDKDQDDYLSSEEIAALQKKCFGKTMDVNELNFIYKTLVDLSASNQQYADCSLFVQNKGITKMGFLVLNKMY 281          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_YEAST (Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevisiae GN=GEM1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.976e-19
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   16 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQE-KQHDG--------VNDLGLTLSGFLFLHALF 408
            +E   PI+ +F+EI+TC++ SA T   +   FY  Q+A+ HP +PLFD     LKP  V ALKRIF++ D + D  L+D E+   Q KCFN  +   E+  +K  + +  +HD         V   G+T  GFL L+ ++
Sbjct:  145 DEEFIPILMEFKEIDTCIKTSAKTQFDLNQAFYLCQRAITHPISPLFDAMVGELKPLAVMALKRIFLLSDLNQDSYLDDNEILGLQKKCFNKSIDVNELNFIKDLLLDISKHDQEYINRKLYVPGKGITKDGFLVLNKIY 284          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_KLULA (Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.403e-19
Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   16 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFV------QEKQHD---GVNDLGLTLSGFLFLHALF 408
            +E   PI+++F+E+ETC++ SA     V   FY  Q+ + +P APLFD     LKP  V ALKR+F++ D D DG LND E+ + Q KCF+  +   E+  +K  +       ++  D    V   G+T  GFL L+ ++
Sbjct:  143 DEEFIPILREFKEVETCIKASAKFKFNVNQAFYLCQRTITNPVAPLFDARIGELKPLGVLALKRVFVLSDMDQDGFLNDDEITKLQKKCFSKAVDVNELQFLKDTLTSISSPNQEYEDYILNVPGKGITKDGFLVLNKIY 282          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_SCHPO (Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces pombe GN=gem1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.185e-18
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   10 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFL 390
            ++E  M P++ +F+EIE C+ CSA   I V ++FY  +  V++P  PL+D  E+T++   + AL RIF + D + D  L+  ELN    KCF+  L   +   +   V+E   +GV +  LTL GFL
Sbjct:  126 TIEHEMIPLINEFKEIEACILCSALEKINVNELFYMCRACVIYPITPLWDAKERTMRKATIHALSRIFFLIDKNNDDLLSVDELNSLSEKCFSKNLSIEDASEILSKVKEICPEGVYEGQLTLPGFL 252          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: GEM1_CANGA (Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=GEM1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.185e-18
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 1
Query:   16 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQE--KQHDGVNDL------GLTLSGFLFLHALF 408
            +E   PI+  F+E++TCV+ SA T   V   FY  Q+++ +P +PLFD     LKP  V AL RIF + D D DG LND E+ + Q KCF   +   E+  +K  + +     +  +++      GLT  GF+ L+ ++
Sbjct:  136 DEEFIPILMAFKEVDTCVKASAKTHFDVNQSFYLCQRSISYPISPLFDAKVGDLKPSAVAALSRIFFLSDEDQDGFLNDNEIMDLQRKCFGKSIDLNELNFIKHTLSDLTSSEEYPSEILYCQGKGLTKQGFIALNKIY 274          
The following BLAST results are available for this feature:
BLAST of CX290934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GEM1_ASPFU5.189e-2842.22Mitochondrial Rho GTPase 1 OS=Aspergillus fumigatu... [more]
GEM1_GIBZE1.156e-2743.18Mitochondrial Rho GTPase 1 OS=Gibberella zeae GN=G... [more]
GEM1_EMENI4.393e-2741.67Mitochondrial Rho GTPase 1 OS=Emericella nidulans ... [more]
GEM1_ASPOR9.786e-2742.22Mitochondrial Rho GTPase 1 OS=Aspergillus oryzae G... [more]
GEM1_YARLI6.564e-2337.88Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica ... [more]
GEM1_ASHGO8.872e-2035.00Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=G... [more]
GEM1_YEAST1.976e-1937.14Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevi... [more]
GEM1_KLULA4.403e-1936.43Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis... [more]
GEM1_SCHPO2.185e-1837.01Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces ... [more]
GEM1_CANGA2.185e-1835.25Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=... [more]

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Properties
Property NameValue
Genbank descriptionC03001H10Rv OF1 Citrus clementina cDNA clone C03001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290934 ID=CX290934; Name=CX290934; organism=Citrus clementina; type=EST; length=410bp
AATGCCACAAGCCTCGAGGAGGTTATGGGACCAATCATGCAACAGTTCAG
GGAGATTGAAACTTGTGTAGAATGTTCTGCAACTACTATGATTCAGGTCC
CTGATGTTTTCTATTATGCTCAAAAAGCAGTACTTCATCCAACAGCTCCA
TTGTTTGATCACGATGAACAAACTTTGAAACCTCGGTGCGTCAGGGCATT
GAAAAGGATATTTATTATCTGTGATCATGACATGGACGGTGCCCTAAATG
ATGCAGAGTTAAATGAGTTTCAGGTTAAATGTTTTAATGCTCCATTACAG
CCTGCTGAAATAGTAAGCGTAAAGAGGTTTGTACAAGAGAAGCAGCATGA
TGGAGTCAATGACCTTGGTCTTACCCTTAGTGGTTTCCTTTTCCTCCATG
CTCTTTTCAT
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