CX290954

Overview
NameCX290954
Unique NameCX290954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.963e-62
Identity = 110/174 (63.22%), Postives = 131/174 (75.29%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+KVIAEY+W+GG+GMD+RSKARTL  P  DP+KLPKWN+DGSST QA GDDSEVIL+PQ +F+DPFR+G NILVMCD Y P GEPIPTN R+NAA++F HPDV AEEPWYGIEQEYTLLQK INWPL                   ADK++  +  V+++YKAC    + ISG
Sbjct:   18 TDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYPGPQGPYYCAAGADKSYGRD-IVDAHYKACLFAGINISG 190          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.588e-61
Identity = 113/174 (64.94%), Postives = 128/174 (73.56%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+KVIAEY+WIGGSG DLRSKARTL  P   P+KLPKWNYDGSST QAPG+DSEVI   +  FKDPFRRGNNILV+CD YTPAGEPIPTNKR  AAK+F HP+VVAE PWYGIEQEYTLLQKD+ WPL                   ADKA+  +  V+++YKAC    + ISG
Sbjct:   16 TDKVIAEYIWIGGSGTDLRSKARTLTGPVNHPSKLPKWNYDGSSTGQAPGEDSEVIYILRQFFKDPFRRGNNILVICDTYTPAGEPIPTNKRHGAAKIFSHPEVVAEVPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRD-IVDAHYKACLYAGINISG 188          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.178e-60
Identity = 106/174 (60.92%), Postives = 131/174 (75.29%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+K+IAEY+W+GG+G+DLRSK+RT+  P  DP++LPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR GNNILVMCD YTPAGEPIPTNKR  AA+VF  P VV++ PW+GIEQEYTLLQ+D+NWPL                   +DK+F  +   +++YKAC    + ISG
Sbjct:   72 TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRD-ISDAHYKACLYAGINISG 244          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.066e-59
Identity = 106/174 (60.92%), Postives = 131/174 (75.29%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+K+IAEY+WIGG+G+D+RSK+RT+  P   P++LPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR GNNILV+CDAYTPAGEPIPTNKR  AA+VF +P V+AE PW+GIEQEYTLLQ ++NWPL                   ADK+F  +   +++YKAC    + ISG
Sbjct:   73 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEVFSNPRVIAEVPWFGIEQEYTLLQTNVNWPLGWPVGGYPGPQGPYYCSAGADKSFGRD-ISDAHYKACLFAGINISG 245          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.831e-59
Identity = 110/174 (63.22%), Postives = 127/174 (72.99%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+K IAEY+WI   G  LRSKARTL  P  DPTKLPKWN+DGSST Q PGDDSEVI+YPQ +FKDPFRRGN+ILVMCD YTPAGEPIPTNKR NAAK+F HPDV AE PW+GIEQEYTLL+K++N P+                   ADKAF  +  V+++YKAC    + ISG
Sbjct:   16 TDKFIAEYIWIDAVG-GLRSKARTLSGPVDDPTKLPKWNFDGSSTGQGPGDDSEVIIYPQAIFKDPFRRGNHILVMCDTYTPAGEPIPTNKRCNAAKIFSHPDVAAEVPWFGIEQEYTLLKKEVNCPIGCPTGGYPGPQGPYYCGIGADKAFGRD-IVDAHYKACLYAGINISG 187          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.522e-58
Identity = 103/174 (59.20%), Postives = 128/174 (73.56%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+KVIAEY+W+GGSG+D+RSK+RT+  P  DP++LPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR GNN+LV+CD YTP GEP+PTNKR  AA++F  P V  + PW+GIEQEYTLLQKD+NWPL                   ADK+F  +   +++YKAC    + ISG
Sbjct:   67 TDKVIAEYIWVGGSGIDIRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNVLVICDTYTPQGEPLPTNKRHRAAQIFSDPKVGEQVPWFGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRD-ISDAHYKACLYAGINISG 239          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.596e-58
Identity = 102/174 (58.62%), Postives = 129/174 (74.14%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+K+IAEY+W+GGSG+DLRSK+RT+  P  DP++LPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR GNNILV+CD YTP GEPIPTNKR  AA++F  P V ++ PW+GIEQEYTL+Q+D+NWPL                   +DK+F  +   +++YKAC    + ISG
Sbjct:   78 TDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIFSDPKVTSQVPWFGIEQEYTLMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRD-ISDAHYKACLYAGIEISG 250          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.390e-58
Identity = 108/174 (62.07%), Postives = 126/174 (72.41%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T K+IAEY+W+GGSGMD+RSKARTL  P  DP+KLPKWN+DGSST QAPGDDSEVIL P+ +F+DPFR+G NILVMCD Y P GEPIP+NKR  AAK+F HPDV AEEPW+GIEQEYTLLQKD  WPL                   ADK++  +  V+  YKAC    + ISG
Sbjct:   16 TGKIIAEYIWVGGSGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQAPGDDSEVILCPRAIFRDPFRKGQNILVMCDCYEPNGEPIPSNKRHGAAKIFSHPDVKAEEPWFGIEQEYTLLQKDTKWPL-GWPLAYPGPQGPYYCAAGADKSYGRD-IVDCAYKACLYAGIDISG 187          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.864e-58
Identity = 104/174 (59.77%), Postives = 127/174 (72.99%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+ +IAEY+WIGG+G+D+RSK+RT+  P   P++LPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR GNNILV+CDAYTP GEPIPTNKR  AA++F +P V AE PWYGIEQEYTLLQ D+ WPL                   ADK+F  +   +++YKAC    + ISG
Sbjct:   72 TDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRD-ISDAHYKACLYAGINISG 244          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.288e-57
Identity = 103/174 (59.20%), Postives = 129/174 (74.14%), Query Frame = 2
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+ +IAEY+WIGG+G+D+RSK+RT+  P + P+++PKWNYDGSST QAPG+DSEVILYPQ +FKDPFR GNNILV+CDAYTPAGEPIPTNKR  AA++F +P V AE PWYGIEQEYTLLQ ++ WPL                   ADK+F  +   +++YKAC    + ISG
Sbjct:   74 TDSIIAEYIWIGGTGIDVRSKSRTISKPVSHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRHRAAEIFSNPKVEAEIPWYGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRD-ISDAHYKACIYAGINISG 246          
The following BLAST results are available for this feature:
BLAST of CX290954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLN13_ORYSJ2.963e-6263.22Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA1_ALNGL5.588e-6164.94Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_ORYSJ6.178e-6060.92Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA4_PHAVU3.066e-5960.92Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA1_DAUCA6.831e-5963.22Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNAC_MAIZE1.522e-5859.20Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_HORVU2.596e-5858.62Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_MAIZE3.390e-5862.07Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLNA2_MEDSA9.864e-5859.77Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_PEA1.288e-5759.20Glutamine synthetase leaf isozyme, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC03002B10Rv OF1 Citrus clementina cDNA clone C03002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290954 ID=CX290954; Name=CX290954; organism=Citrus clementina; type=EST; length=633bp
CTCACTCATTTTTTATTTTCATTTTCGTTTCAAAACAAACAAAGCTGCAA
GCTAGGCAGCCATGTCTCTTCTCAACGATCTCCTCAACCTTAATCTCTCT
GAATCCACCGAAAAAGTCATCGCCGAATACGTATGGATAGGCGGATCTGG
TATGGATTTGAGAAGCAAAGCCAGAACTTTGCCAGCTCCAACAACGGACC
CTACCAAGCTACCGAAATGGAATTACGATGGCTCCAGCACTAACCAAGCC
CCTGGTGATGACAGTGAAGTTATTTTGTACCCGCAAACGGTGTTTAAGGA
TCCTTTCAGAAGAGGGAACAATATCCTGGTAATGTGCGATGCGTACACTC
CAGCCGGCGAGCCCATCCCAACAAACAAAAGATTCAATGCCGCCAAAGTT
TTCGGCCACCCCGATGTTGTCGCCGAAGAGCCATGGTATGGCATTGAGCA
GGAGTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGGGGTGGCCAG
TTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGTGTTGGCGCT
GATAAGGCTTTTAGGCCCGAGACATTTGTGAATTCTTACTACAAAGCTTG
CTTTACGCTGGAATTAACAATCAGTGGGCATTT
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