CX290954

Overview
NameCX290954
Unique NameCX290954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.538e-21
Identity = 65/180 (36.11%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  122 AEYVWIGGS------GM---DLRSKARTLPAPT-TDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAF-RPETFVNSYYKACFTLELTISG 628
            AEY+W  G+      GM   ++RSK +   AP   D ++ P W++DGSST QA G++S+ IL P  V  DP R   ++LVMC+ + P G+P  TN R    ++     V AE+ WYG EQEYT+L K                         A+ AF RP     ++ +AC    L ISG
Sbjct:   37 AEYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCILRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREII-DDKVTAEDCWYGFEQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRP--LAEAHMEACMKAGLVISG 213          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 60/171 (35.09%), Postives = 80/171 (46.78%), Query Frame = 2
Query:  122 AEYVWIGGSG--MDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            AEY+WI G+     LRSK + +         LP W +DGSSTNQA G  S+ +L P     DP R G++ILV+C+       P  +N R   A+V       A+EP +GIEQEYT  Q    +PL                   AD+ F  +  V ++   C    L ISG
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEVAER--FAAQEPIFGIEQEYTFFQD--GYPLGFPKGGFPAPQGGYYCGVGADEIFGRDV-VEAHLDNCLKAGLAISG 170          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  122 AEYVWIGGSG--MDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKD 475
            AEY+WI G+     LRSK + L    +D ++LP+W +DGSSTNQA G  S+++L P     DP R G+++LV+C+       P P+N R     V        +EP +GIEQEYT L+ D
Sbjct:    5 AEYIWIDGTQPTAKLRSKTKIL----SDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPVAER--FAGQEPIFGIEQEYTFLKGD 118          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.761e-14
Identity = 51/127 (40.16%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  122 AEYVWIGGSGMD--LRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAE-EPWYGIEQEYTLLQ--KDINWP 487
            AEY+WI G+  +  +RSK R +     D  +   W +DGSSTNQAPG +S+ +L P     DP R G+N LV+C+       P PTN R   A   G  +  A+  P +GIEQEYT  +  +   WP
Sbjct:    5 AEYIWIDGTEPEPLMRSKTRIIK----DGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTR---AAALGVAERYADMSPMFGIEQEYTFFKDGRPYGWP 123          
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 45/117 (38.46%), Postives = 59/117 (50.43%), Query Frame = 2
Query:  125 EYVWIGG--SGMDLRSKART---LPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEY 457
            EY+W+ G     +LR K +       PT +  +LP W +DGSST QA G  S+ +L P  VF D   R N +LVMC+   P G+ P  +NKR       G         W+G EQEY
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLE--QLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDA-ARTNGVLVMCEVMMPDGKTPHASNKRATILDDAG--------AWFGFEQEY 112          
The following BLAST results are available for this feature:
BLAST of CX290954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA2_CHLRE2.538e-2136.11Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_STRVR3.792e-1735.09Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY8.448e-1741.67Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL1.761e-1440.16Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_BRAJA9.047e-1138.46Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]

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Properties
Property NameValue
Genbank descriptionC03002B10Rv OF1 Citrus clementina cDNA clone C03002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290954 ID=CX290954; Name=CX290954; organism=Citrus clementina; type=EST; length=633bp
CTCACTCATTTTTTATTTTCATTTTCGTTTCAAAACAAACAAAGCTGCAA
GCTAGGCAGCCATGTCTCTTCTCAACGATCTCCTCAACCTTAATCTCTCT
GAATCCACCGAAAAAGTCATCGCCGAATACGTATGGATAGGCGGATCTGG
TATGGATTTGAGAAGCAAAGCCAGAACTTTGCCAGCTCCAACAACGGACC
CTACCAAGCTACCGAAATGGAATTACGATGGCTCCAGCACTAACCAAGCC
CCTGGTGATGACAGTGAAGTTATTTTGTACCCGCAAACGGTGTTTAAGGA
TCCTTTCAGAAGAGGGAACAATATCCTGGTAATGTGCGATGCGTACACTC
CAGCCGGCGAGCCCATCCCAACAAACAAAAGATTCAATGCCGCCAAAGTT
TTCGGCCACCCCGATGTTGTCGCCGAAGAGCCATGGTATGGCATTGAGCA
GGAGTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGGGGTGGCCAG
TTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGTGTTGGCGCT
GATAAGGCTTTTAGGCCCGAGACATTTGTGAATTCTTACTACAAAGCTTG
CTTTACGCTGGAATTAACAATCAGTGGGCATTT
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