CX290985

Overview
NameCX290985
Unique NameCX290985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  159 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT---ADV-LPETKDWRESGIVSPVKDQGHCGSCWTFS 491
            F  +  ++ KIY++++E   RF  F  NL  I  TN+K  SY LGLN FAD S +EF+    G+      TT+ +++      DV +PE  DWR+ G V+PVK+QG CGSCW FS
Sbjct:   48 FESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFS 162          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  150 ALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTK--GNH--KLTADV--LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGS 503
            A  F  F R YG+ YE++ E + R A F +NL+L+R    +    + G+ KF D S  EF    L  A   +A  +    H  K  AD+  +P+  DWRE G V+PVKDQG CGSCW FS  G+
Sbjct:   35 AALFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGN 158          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  150 ALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTK--GNH--KLTADV--LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGS 503
            A  F  F R YG+ YE++ E + R A F +NL+L+R    +    + G+ KF D S  EF    L  A   +A  +    H  K  AD+  +P+  DWRE G V+PVKDQG CGSCW FS  G+
Sbjct:   35 AALFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGN 158          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  159 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHK--LTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGS 503
            F  F +++GK+Y S+EE   RF+ F  NL       +   S R G+ +F+D +  EF+R  LG           N    L    LPE  DWR+ G V+PVK+QG CGSCW+FSTTG+
Sbjct:   48 FTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGA 164          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  159 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTAD---VLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGS 503
            F  +   + K YE+V+E   RF  F  NL+ I  TN+K  SY LGLN+FAD S +EF    +G+  + +     + +   +    LPE  DWR+ G V+PV+ QG CGSCW FS   +
Sbjct:   48 FNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVAT 165          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  159 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRL-GAAQNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGS 503
            F  + +++ K Y S  E   R   F+ N   I++ N++  ++++GLN+F+D S+ E +   L    QNCSA TK N+       P + DWR+ G +VSPVK+QG CGSCWTFSTTG+
Sbjct:   33 FTSWMKQHQKTYSS-REYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSEPQNCSA-TKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGA 147          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  159 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQ-----NCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGS 503
            F  +   + K Y+SVEE   RF  F +NL  I   N +  SY LGLN+FAD + EEF+   LG A+         +    ++   D LP++ DWR+ G V+PVKDQG CGSCW FST  +
Sbjct:   51 FESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITD-LPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAA 169          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  159 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGS 503
            F  +  ++ K Y S EE   R   F+ NL  I + N +  ++++GLN+F+D S++E +R  L +  QNCSAT K N+       P + DWR+ G  V+PVK+QG CGSCWTFSTTG+
Sbjct:   35 FQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQNCSAT-KSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGA 149          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.977e-18
Identity = 53/119 (44.54%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  153 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGS 503
            L F  +  ++ K Y S+EE   R   F  N   I + N    +++LGLN+F+D S++E +   L +  QNCSAT KGN+       P + DWR+ G  VSPVK+QG CGSCWTFSTTG+
Sbjct:   33 LHFKSWMVQHQKKY-SLEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSAT-KGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGA 149          
BLAST of CX290985 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-17
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  198 SVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGS 503
            S+ E   RF  F  NL  +   N K LSYRLGL +FAD + +E++   LGA        + + +  A   D LPE+ DWR+ G V+ VKDQG CGSCW FST G+
Sbjct:   65 SLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGA 169          
The following BLAST results are available for this feature:
BLAST of CX290985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PAPA1_CARPA5.524e-1943.48Papain OS=Carica papaya PE=1 SV=1[more]
LMCPB_LEIME9.423e-1941.13Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP2_LEIPI9.423e-1941.13Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
A494_ARATH9.423e-1941.03Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
PAPA3_CARPA2.742e-1839.83Caricain OS=Carica papaya PE=1 SV=2[more]
CATH_RAT4.677e-1841.88Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
XCP1_ARATH6.108e-1842.50Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
CATH_BOVIN6.108e-1843.59Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_PIG7.977e-1844.54Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
RD21A_ARATH1.042e-1744.76Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC03002E08Rv OF1 Citrus clementina cDNA clone C03002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290985 ID=CX290985; Name=CX290985; organism=Citrus clementina; type=EST; length=505bp
TGGTCTCGTCCATCATCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCA
TCAAGCTTCGACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCT
CCGTGACTTCGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATG
CTCTCTCCTTTGCCCGTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCC
GTTGAGGAGATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTT
AATCAGATCTACGAATCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACA
AGTTTGCTGATTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCT
GCACAAAACTGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGA
TGTGCTTCCAGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAG
TTAAAGACCAAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGA
TCTCT
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