CX290986

Overview
NameCX290986
Unique NameCX290986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.271e-50
Identity = 94/171 (54.97%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE+F  +G++PPKGVLLYGPPGTGKT+LA+A+A+  +A F+ VV+S    K++GE AR++RE+F  A+   P IIF+DEIDAIG +R   GTS +REIQRTLM+LL +LDGF+
Sbjct:   99 VALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFN 269          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.271e-50
Identity = 94/171 (54.97%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE+F  +G++PPKGVLLYGPPGTGKT+LA+A+A+  +A F+ VV+S    K++GE AR++RE+F  A+   P IIF+DEIDAIG +R   GTS +REIQRTLM+LL +LDGF+
Sbjct:   99 VALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFN 269          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.271e-50
Identity = 94/171 (54.97%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE+F  +G++PPKGVLLYGPPGTGKT+LA+A+A+  +A F+ VV+S    K++GE AR++RE+F  A+   P IIF+DEIDAIG +R   GTS +REIQRTLM+LL +LDGF+
Sbjct:   99 VALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFN 269          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.271e-50
Identity = 94/171 (54.97%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE+F  +G++PPKGVLLYGPPGTGKT+LA+A+A+  +A F+ VV+S    K++GE AR++RE+F  A+   P IIF+DEIDAIG +R   GTS +REIQRTLM+LL +LDGF+
Sbjct:   99 VALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFN 269          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.271e-50
Identity = 94/171 (54.97%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE+F  +G++PPKGVLLYGPPGTGKT+LA+A+A+  +A F+ VV+S    K++GE AR++RE+F  A+   P IIF+DEIDAIG +R   GTS +REIQRTLM+LL +LDGF+
Sbjct:   99 VALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFN 269          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.271e-50
Identity = 95/171 (55.56%), Postives = 124/171 (72.51%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD  T+ I+  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL+A+AIA  ++A F++VV S ++ KYIGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTLM+LL ++DGFD
Sbjct:  102 VALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFD 272          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.411e-49
Identity = 94/171 (54.97%), Postives = 126/171 (73.68%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD  T+ I+  LP E DP V      +   VSY+ +GGL  Q++ELRE+IELPL +PELF +VGI+PPKGVLLYGPPG GKTL+A+A+A  ++A F++VV S ++ K+IGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTLM+LL ++DGFD
Sbjct:  104 VALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFD 274          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.843e-49
Identity = 93/171 (54.39%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD  T+ I+  LP E DP V      +   V+Y+ +GGL  Q++ELRE+IELPL +PELF +VGI+PPKGVLLYGPPG GKTL+A+A+A++++A F++VV S ++ K+IGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTLM+LL ++DGFD
Sbjct:  103 VALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFD 273          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.843e-49
Identity = 94/171 (54.97%), Postives = 124/171 (72.51%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD  T+ I+  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL+A+A+A  ++A F++VV S ++ KYIGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTLM+LL ++DGFD
Sbjct:  105 VALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFD 275          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.407e-49
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD  T+ ++  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL+A+A+A  ++A F++VV S ++ KYIGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTLM+LL ++DGFD
Sbjct:  105 VALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFD 275          
The following BLAST results are available for this feature:
BLAST of CX290986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PSMR_SULIN8.271e-5054.97Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM8.271e-5054.97Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL8.271e-5054.97Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK8.271e-5054.97Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA8.271e-5054.97Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_PYRFU8.271e-5055.56Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_THEON1.411e-4954.97Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRKO1.843e-4954.39Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_PYRAB1.843e-4954.97Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_PYRHO2.407e-4954.39Proteasome-activating nucleotidase OS=Pyrococcus h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03002F01Rv OF1 Citrus clementina cDNA clone C03002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290986 ID=CX290986; Name=CX290986; organism=Citrus clementina; type=EST; length=515bp
AGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTG
AAGTTGATCCGGTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTT
AGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGA
ATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAA
TTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAG
ACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAA
GGTGGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGT
TGATAAGAGAGATGTTTGGATATGCACGTGATCATCAACCCTGCATCATT
TTTATGGATGAAATTGATGCCATCGGTGGACGCCGTTTTAGTGAAGGAAC
CAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAGC
TTGATGGATTTGATC
back to top