CX290986
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 3.044e-44 Identity = 84/171 (49.12%), Postives = 122/171 (71.35%), Query Frame = 2 Query: 2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514 V L + ++ LP E D + + + +VSY+ +GG Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A++ A F++VV S + KY+GE R++R++F A+++ P IIF+DE+DAI RF T ADRE+QR LMELLNQ+DGFD Sbjct: 120 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD 290
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 3.976e-44 Identity = 84/171 (49.12%), Postives = 122/171 (71.35%), Query Frame = 2 Query: 2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514 V LD + ++ LP E D + + + +V+Y+ +GG Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A + A F++VV S + KY+GE R++R++F A+++ P IIF+DE+DAI RF T ADRE+QR LMELLNQ+DGFD Sbjct: 125 VGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD 295
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 3.976e-44 Identity = 86/171 (50.29%), Postives = 122/171 (71.35%), Query Frame = 2 Query: 2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514 V L + ++ LP E D ++ + ++ + SYS +GG Q +E+RE++ELPL + L+ ++GI PP+GVLLYGPPGTGKT+LA+A+A + A F++VV S + KY+GE RL+R++F AR++ P IIF+DEIDAI +RF T ADRE+QR LMELLNQ+DGFD Sbjct: 115 VALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFD 285
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 6.782e-44 Identity = 82/171 (47.95%), Postives = 122/171 (71.35%), Query Frame = 2 Query: 2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514 V L + ++ LP E D + + ++ +V YS +GG+ Q +E+RE++ELPL + EL+ ++GI+PP+GVL+YGPPG GKT+LA A+A + A F++VV S + KY+GE R++R++F A+++ P IIF+DEIDAI +RF T ADRE+QR L+ELLNQ+DGFD Sbjct: 127 VALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 297
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3) HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43 Identity = 85/161 (52.80%), Postives = 115/161 (71.43%), Query Frame = 2 Query: 29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511 I+ LP E D V M ++ Y+ +GGL QI+EL E+I LP+ + E F ++GI+PPKGVLLYGPPGTGKTL+ARA A+ +A FLK+ ++ +IG+ A+L+R+ F A++ PCIIF+DEIDAIG +RF S DRE+QRT++ELLNQLDGF Sbjct: 144 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 304
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43 Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 2 Query: 29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511 I+ LP E D V M ++ Y+ +GGL QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKTL+ARA A+ +A FLK+ ++ +IG+ A+L+R+ F A++ PCIIF+DEIDAIG +RF S DRE+QRT++ELLNQLDGF Sbjct: 145 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 305
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43 Identity = 84/161 (52.17%), Postives = 114/161 (70.81%), Query Frame = 2 Query: 29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511 I+ LP E D V M ++ Y +GGL QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKTL+ARA A+ +A FLK+ ++ +IG+ A+L+R+ F A++ PCIIF+DEIDAIG +RF S DRE+QRT++ELLNQLDGF Sbjct: 144 ILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 304
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43 Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 2 Query: 29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511 I+ LP E D V M ++ Y+ +GGL QI+EL E+I LP+ + + F ++GI+PPKGVLLYGPPGTGKTL+ARA A+ +A FLK+ ++ +IG+ A+L+R+ F A++ PCIIF+DEIDAIG +RF S DRE+QRT++ELLNQLDGF Sbjct: 150 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 310
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43 Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 2 Query: 29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511 I+ LP E D V M ++ Y+ +GGL QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKTL+ARA A+ +A FLK+ ++ +IG+ A+L+R+ F A++ PCIIF+DEIDAIG +RF S DRE+QRT++ELLNQLDGF Sbjct: 145 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 305
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 7.499e-43 Identity = 81/171 (47.37%), Postives = 121/171 (70.76%), Query Frame = 2 Query: 2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514 V L + ++ LP E D + + + +V Y+ +GG+ Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A + A F++VV S + KY+GE R++R++F A+++ P IIF+DEIDAI +RF T ADRE+QR L+ELLNQ+DGFD Sbjct: 130 VALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 300 The following BLAST results are available for this feature:
BLAST of CX290986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 375
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290986 ID=CX290986; Name=CX290986; organism=Citrus clementina; type=EST; length=515bpback to top |