CX290986

Overview
NameCX290986
Unique NameCX290986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.044e-44
Identity = 84/171 (49.12%), Postives = 122/171 (71.35%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L   +  ++  LP E D  +  +   +  +VSY+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A++  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFD
Sbjct:  120 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD 290          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.976e-44
Identity = 84/171 (49.12%), Postives = 122/171 (71.35%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD  +  ++  LP E D  +  +   +  +V+Y+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFD
Sbjct:  125 VGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD 295          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.976e-44
Identity = 86/171 (50.29%), Postives = 122/171 (71.35%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L   +  ++  LP E D  ++ +  ++  + SYS +GG   Q +E+RE++ELPL +  L+ ++GI PP+GVLLYGPPGTGKT+LA+A+A +  A F++VV S  + KY+GE  RL+R++F  AR++ P IIF+DEIDAI  +RF   T ADRE+QR LMELLNQ+DGFD
Sbjct:  115 VALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFD 285          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.782e-44
Identity = 82/171 (47.95%), Postives = 122/171 (71.35%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L   +  ++  LP E D  +  +  ++  +V YS +GG+  Q +E+RE++ELPL + EL+ ++GI+PP+GVL+YGPPG GKT+LA A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFD
Sbjct:  127 VALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 297          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43
Identity = 85/161 (52.80%), Postives = 115/161 (71.43%), Query Frame = 2
Query:   29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511
            I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + E F ++GI+PPKGVLLYGPPGTGKTL+ARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF
Sbjct:  144 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 304          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43
Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 2
Query:   29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511
            I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKTL+ARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF
Sbjct:  145 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 305          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43
Identity = 84/161 (52.17%), Postives = 114/161 (70.81%), Query Frame = 2
Query:   29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511
            I+  LP E D  V  M  ++     Y  +GGL  QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKTL+ARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF
Sbjct:  144 ILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 304          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43
Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 2
Query:   29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511
            I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + + F ++GI+PPKGVLLYGPPGTGKTL+ARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF
Sbjct:  150 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 310          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43
Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 2
Query:   29 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 511
            I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKTL+ARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF
Sbjct:  145 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 305          
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.499e-43
Identity = 81/171 (47.37%), Postives = 121/171 (70.76%), Query Frame = 2
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFD
Sbjct:  130 VALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 300          
The following BLAST results are available for this feature:
BLAST of CX290986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PRS6B_ARATH3.044e-4449.1226S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_SOLTU3.976e-4449.1226S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_DICDI3.976e-4450.2926S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_MANSE6.782e-4447.9526S protease regulatory subunit 6B OS=Manduca sext... [more]
PS6AB_ARATH3.366e-4352.8026S protease regulatory subunit 6A homolog B OS=Ar... [more]
PS6AA_ARATH3.366e-4352.1726S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_SOLLC3.366e-4352.1726S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ3.366e-4352.1726S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_BRACM3.366e-4352.1726S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS6B_RAT7.499e-4347.3726S protease regulatory subunit 6B OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC03002F01Rv OF1 Citrus clementina cDNA clone C03002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290986 ID=CX290986; Name=CX290986; organism=Citrus clementina; type=EST; length=515bp
AGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTG
AAGTTGATCCGGTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTT
AGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGA
ATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAA
TTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAG
ACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAA
GGTGGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGT
TGATAAGAGAGATGTTTGGATATGCACGTGATCATCAACCCTGCATCATT
TTTATGGATGAAATTGATGCCATCGGTGGACGCCGTTTTAGTGAAGGAAC
CAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAGC
TTGATGGATTTGATC
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