CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291022_ssr281 microsatellite CX291022_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria australasica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.091e-37
Identity = 71/104 (68.27%), Postives = 89/104 (85.58%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGE 323
            LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPEVG +V +   FGAVESVKATSDVNSP+SG++VEVN +L+ +P L+N SPY+DGW+IKV+  +  E
Sbjct:   40 LKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSE 143          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CARHZ (Glycine cleavage system H protein OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvH PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.566e-37
Identity = 74/123 (60.16%), Postives = 89/123 (72.36%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            KDLKY+  HEW+KVDGN   IGITD AQ  LGD+V++ELP VG  +  G SFG VESVKA SD+ +PVSGKVVEVNEE+  SP LVN  PY  GW+IKVE+ +  EL +L+  + Y K  EEE
Sbjct:    6 KDLKYSREHEWIKVDGNIGIIGITDFAQKSLGDIVFIELPGVGDEISAGDSFGVVESVKAASDLYAPVSGKVVEVNEEVIESPQLVNEDPYGKGWMIKVEISNEAELDELLSPEDYEKLLEEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BREBN (Glycine cleavage system H protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gcvH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.355e-36
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            K+L+Y++ HEWV+V+GN A IGIT  AQ  LGD+V+VELPEVG T++Q   FG+VESVK  S++ +PV+GKVVEVN EL  +P LVNSSPY+  W+I VE+    EL KLMDAD+Y    +E
Sbjct:    5 KNLRYSEEHEWVRVEGNKAYIGITSFAQAELGDIVFVELPEVGATIQQDEPFGSVESVKTVSELYAPVTGKVVEVNGELEDAPELVNSSPYEQAWMIVVELSDTAELDKLMDADKYEAMVKE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ALCBS (Glycine cleavage system H protein OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.957e-35
Identity = 69/122 (56.56%), Postives = 87/122 (71.31%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+YA SHEW KV+   AT+GI+DHAQD +GD+VYVELPEVG  V  G   G VESVKA SD+ SPVSG++VE+NE L   P LVN+ PY+ GW+ KV++   GEL  L+ ADQY    + E
Sbjct:    7 ELRYASSHEWAKVEDGVATVGISDHAQDAMGDLVYVELPEVGQVVAAGDETGVVESVKAASDIYSPVSGEIVEINEALEDEPELVNNVPYEGGWLFKVQLTDEGELDSLLTADQYQAQIDSE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAS1 (Glycine cleavage system H protein OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gcvH PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35
Identity = 66/121 (54.55%), Postives = 92/121 (76.03%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN+ TIGIT++AQ  LGD+V+VELPEV   + +G +FG+VESVK  S++ +PVSGKV+E NEEL  SP  VN SPY+  W++KVE+    +L++LM A+QY++   E
Sbjct:    6 ELKYSKEHEWVKVEGNTVTIGITEYAQGELGDIVFVELPEVDDEINEGDTFGSVESVKTVSELYAPVSGKVLESNEELEDSPEFVNESPYEKAWMVKVELSDESQLEELMSAEQYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SYMTH (Glycine cleavage system H protein OS=Symbiobacterium thermophilum GN=gcvH PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.693e-35
Identity = 69/121 (57.02%), Postives = 86/121 (71.07%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            DLKY+  HEW++V+GN   +GIT  AQD LGDVV+VELPEVG  +KQ   FG VESVK  SD+  P SGKVVEVN +L SSP L+N  PY +GWI+K+E+ +  EL  L+DA  Y  F +E
Sbjct:    7 DLKYSKEHEWIRVEGNIGIVGITWFAQDQLGDVVFVELPEVGRELKQNEQFGVVESVKTVSDLYCPASGKVVEVNTKLESSPELINQDPYGEGWILKLELSNPAELDNLLDAAAYDAFTKE 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAHJ (Glycine cleavage system H protein OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gcvH PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.436e-35
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN+ TIGIT++AQ  LGD+V+VELPEV   + +G +FG+VESVK  S++ +PVSGKVVE NEEL  SP  VN SPY+  W++KVE+    +L  L+ ADQY +   E
Sbjct:    6 ELKYSKEHEWVKVEGNTVTIGITEYAQGELGDIVFVELPEVDDEINEGDTFGSVESVKTVSELYAPVSGKVVESNEELEDSPEFVNESPYEKAWMVKVELSDESQLDDLLSADQYKEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAB (Glycine cleavage system H protein OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.711e-35
Identity = 65/121 (53.72%), Postives = 92/121 (76.03%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY++ HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +L+ L+ A++Y++   E
Sbjct:    6 ELKYSNEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBHB (Glycine cleavage system H protein OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 69/124 (55.65%), Postives = 93/124 (75.00%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K LK+ DSHEWV+ +G+ +ATIGI++HAQ+ LGDVV+V+LP+V   V+ G SF  VESVKA SD+ SP++G+VVE+NEEL  SP L+N  PY+ GWI+KV++    EL  L DA++Y    EEE
Sbjct:    3 KTLKFTDSHEWVRDNGDGTATIGISEHAQEMLGDVVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPITGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACHK (Glycine cleavage system H protein OS=Bacillus thuringiensis subsp. konkukian GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_FLAAU2.091e-3768.27Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_CARHZ3.566e-3760.16Glycine cleavage system H protein OS=Carboxydother... [more]
GCSH_BREBN1.355e-3658.20Glycine cleavage system H protein OS=Brevibacillus... [more]
GCSH_ALCBS1.957e-3556.56Glycine cleavage system H protein OS=Alcanivorax b... [more]
GCSH_STAS14.359e-3554.55Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_SYMTH5.693e-3557.02Glycine cleavage system H protein OS=Symbiobacteri... [more]
GCSH_STAHJ7.436e-3555.37Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAB9.711e-3553.72Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_VIBHB1.268e-3455.65Glycine cleavage system H protein OS=Vibrio harvey... [more]
GCSH_BACHK1.268e-3452.46Glycine cleavage system H protein OS=Bacillus thur... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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