CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291022_ssr281 microsatellite CX291022_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACCZ (Glycine cleavage system H protein OS=Bacillus cereus (strain ZK / E33L) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACCN (Glycine cleavage system H protein OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 65/121 (53.72%), Postives = 89/121 (73.55%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            L+Y++ HEWVK +GN   IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A E++KL+ A++Y +   ++
Sbjct:    7 LRYSEEHEWVKTEGNQVVIGITHFAQSELGDIVFVELPEVGATLEANEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASEVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACC3 (Glycine cleavage system H protein OS=Bacillus cereus (strain 03BB102) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACC0 (Glycine cleavage system H protein OS=Bacillus cereus (strain AH820) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACAN (Glycine cleavage system H protein OS=Bacillus anthracis GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACAC (Glycine cleavage system H protein OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACAA (Glycine cleavage system H protein OS=Bacillus anthracis (strain A0248) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBSL (Glycine cleavage system H protein OS=Vibrio splendidus (strain LGP32) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 67/122 (54.92%), Postives = 92/122 (75.41%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            LK+ADSHEWVK +G+ + TIGI++HAQ+ LGDVV+V+LP+    ++ G SF  VESVKA SD+ +P+SG++VE+NEEL  SP L+N  PY+ GWI+KV+M  A EL  L DA++Y    EE+
Sbjct:    5 LKFADSHEWVKDNGDGTVTIGISEHAQELLGDVVFVDLPDTEDEIEAGESFSLVESVKAASDIYAPISGEIVEINEELEDSPELINEEPYEGGWIVKVKMSDASELNNLKDAEEYLSSVEED 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAR (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MRSA252) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 65/121 (53.72%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +L+ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAN (Glycine cleavage system H protein OS=Staphylococcus aureus (strain N315) GN=gcvH PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 65/121 (53.72%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +L+ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_BACCZ1.268e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACCN1.268e-3453.72Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACC31.268e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACC01.268e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACAN1.268e-3452.46Glycine cleavage system H protein OS=Bacillus anth... [more]
GCSH_BACAC1.268e-3452.46Glycine cleavage system H protein OS=Bacillus anth... [more]
GCSH_BACAA1.268e-3452.46Glycine cleavage system H protein OS=Bacillus anth... [more]
GCSH_VIBSL1.656e-3454.92Glycine cleavage system H protein OS=Vibrio splend... [more]
GCSH_STAAR1.656e-3453.72Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAN1.656e-3453.72Glycine cleavage system H protein OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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