CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291022_ssr281 microsatellite CX291022_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAM (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 65/121 (53.72%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +L+ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAA9 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain JH9) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 65/121 (53.72%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +L+ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAA2 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain JH1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 65/121 (53.72%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +L+ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAA1 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 65/121 (53.72%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +L+ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACWK (Glycine cleavage system H protein OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN+  IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNAVVIGITHFAQGELGDIVFVELPEVGATIQADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACSU (Glycine cleavage system H protein OS=Bacillus subtilis GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            KDL+Y+  HEWVKV+G  A IGIT  AQ  LGD+V+VELPEVG  +K    FG+VESVK  S++ +P++G VVEVNE+L  SP  VN SPY+  W+I VE   A E++KLM A+QY +  +E+
Sbjct:    5 KDLRYSGEHEWVKVEGEKARIGITHFAQSELGDIVFVELPEVGAEIKADEPFGSVESVKTVSELYAPINGTVVEVNEDLDDSPEFVNESPYEKAWMIVVEPSDASEIEKLMTAEQYEEMTQED 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACCR (Glycine cleavage system H protein OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQGELGDIVFVELPEVGATIEANEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACCQ (Glycine cleavage system H protein OS=Bacillus cereus (strain Q1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQSELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACC7 (Glycine cleavage system H protein OS=Bacillus cereus (strain AH187) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQSELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACC4 (Glycine cleavage system H protein OS=Bacillus cereus (strain B4264) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQGELGDIVFVELPEVGATIEANEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_STAAM1.656e-3453.72Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA91.656e-3453.72Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA21.656e-3453.72Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA11.656e-3453.72Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_BACWK1.656e-3452.46Glycine cleavage system H protein OS=Bacillus weih... [more]
GCSH_BACSU1.656e-3454.47Glycine cleavage system H protein OS=Bacillus subt... [more]
GCSH_BACCR1.656e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACCQ1.656e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACC71.656e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACC41.656e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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