CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MYCBO (Glycine cleavage system H protein OS=Mycobacterium bovis GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.309e-26
Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSAT-IGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSA------GELKKLMDADQY 353
            DL Y   HEW++  G+    +GITD+AQ  LGDVV+V+LP +G  V  G +FG VES K+ SD+ +P+SGKV  VN +L  +P LVNS PY  GW++ +++DS+        L  L+DA+ Y
Sbjct:    7 DLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSAVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAY 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PYRHO (Probable glycine cleavage system H protein OS=Pyrococcus horikoshii GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.240e-26
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 3
Query:   12 LKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVE-MDSAGELKKLMDADQYTKF 362
            L Y   HEW +V +  +  +GITD+AQ  LGD+ YVELPEVG  V +G     VESVKA S+V +PVSG+V+EVNEELS SP  +N  PY   WI K++  +   ELK+LMDA++Y ++
Sbjct:   17 LYYTKDHEWAQVLEDGTVLVGITDYAQKELGDLAYVELPEVGKEVSKGDVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPKNLEEELKELMDAEKYAEY 134          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_DINSH (Glycine cleavage system H protein OS=Dinoroseobacter shibae (strain DFL 12) GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.240e-26
Identity = 51/112 (45.54%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   18 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            Y D HEW++V+ ++ATIGIT HA + LG+VV++EL   G T  +G   G VESVKA SD+ +PV+G+++E N  L  +PA +N  P  + W+ K+++   GEL +L+DA+ Y
Sbjct:    6 YTDDHEWIEVEDDTATIGITKHAAEQLGEVVFIELQPEGETFVKGDEIGVVESVKAASDIFAPVTGEILEANAALVETPAELNEDPEGNSWLYKIKLSDPGELSELLDAEGY 117          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CORJK (Glycine cleavage system H protein OS=Corynebacterium jeikeium (strain K411) GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.240e-26
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    9 DLKYADSHEWVK----VDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            D  Y++ HEWV     V+G +  +GIT  A + LGD+V+VELPEVG  V+ G +FG VES K+ SD+ +PVSG+VV VNE L  +  L+N  PY +GW+ +V++  AGE   LM+A+ Y
Sbjct:    7 DFLYSEEHEWVNTSAVVEGETVRVGITHIAAEALGDIVFVELPEVGSEVEAGEAFGEVESTKSVSDIYAPVSGEVVAVNEALEDNAGLINEDPYGEGWLYEVKVTEAGE---LMEAEAY 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PROMA (Glycine cleavage system H protein OS=Prochlorococcus marinus GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 50/118 (42.37%), Postives = 84/118 (71.19%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            K  ++ADSHE+   +G+   IGI+  A D LGD+V+V+LP +G  ++QG SFG+VESVKA  D+N+P+ G+V+++NE + +SP  + + P+ +GW++ V+   A +L KLM ++ Y++
Sbjct:    7 KKFRFADSHEYACPEGDLVRIGISAFAVDQLGDIVFVDLPGIGTLLEQGISFGSVESVKAVEDMNAPIGGEVLQINESVLNSPEELQNDPHGEGWLLLVKPSDASQLDKLMSSEIYSE 124          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_KOCRD (Glycine cleavage system H protein OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 54/122 (44.26%), Postives = 81/122 (66.39%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSAT--IGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCE 368
            +L Y   HEWV+     +T  +GITDHAQ  LG+VV+V+LPEVG TV  G   G +ES K+ SD+ +PV+G++V VN+EL+ +P L+N +PY+ GW+  V ++S     +L+DA  Y +  +
Sbjct:    7 ELAYTAEHEWVQDLSEDSTFKVGITDHAQSELGEVVFVQLPEVGDTVTAGDVVGEIESTKSVSDLFAPVTGEIVSVNDELADNPGLLNEAPYEAGWLFTVRVESQDATAQLLDAQAYQQLLD 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BRAJA (Glycine cleavage system H protein OS=Bradyrhizobium japonicum GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 3
Query:   18 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            Y   HEW+ ++G+ AT+GITD+AQ  LGDVV++ELP++G  +K+  +   VESVKA SDV +PV+G+V+E N+ L++ PALVNS      W  K+++    EL  LMD   Y
Sbjct:    6 YTSDHEWLAIEGDVATVGITDYAQSQLGDVVFIELPKLGRALKKAEAAAVVESVKAASDVYAPVTGEVLETNDALAAEPALVNSDAQGKAWFFKIKIADKSELGGLMDEAAY 117          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BART1 (Glycine cleavage system H protein OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=gcvH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 3
Query:   18 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +   HEW+ VDG   T+G+T +AQ+ LGD+V+V+LP+ G  + +G +   VESVKA SDV SP+ G+VVE+NE L+ +P LVN     +GW+ K+ +    +L++L+D D Y
Sbjct:    6 FTQDHEWLSVDGQMVTVGVTHYAQEQLGDLVFVDLPQSGTKLSKGEAAAVVESVKAASDVYSPLDGEVVEINEALTDNPELVNQKAETEGWLWKMTLQDETQLEELLDEDAY 117          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_NEIG1 (Glycine cleavage system H protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKY  SHEW++++ +   T+GIT HAQ+ LGD+V+VELPEVG  +      G VESVKA SDV +P++G+VV VN++L  +P   NS PY  GW  K++  +  +   L+ A+QY
Sbjct:    8 ELKYVASHEWLRLEEDGTITVGITHHAQELLGDIVFVELPEVGANLAAEEQSGVVESVKAASDVYAPIAGEVVAVNDDLPGAPETANSDPYGAGWFFKIKPANPADYDGLLTAEQY 123          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MYCVP (Glycine cleavage system H protein OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSAT-IGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDS---AGELKKLMDADQY 353
            DL Y   HEWV+  G+    +GITD+AQ  LGDVV+V+LP+VG  V  G SFG VES K+ SD+ +PV+ KV+ VN +L  +P LVNS PY +GW+++++ ++      L  L+DA+ Y
Sbjct:    7 DLSYTTEHEWVQRTGDGTVRVGITDYAQSALGDVVFVQLPDVGSDVTAGESFGEVESTKSVSDLYAPVTAKVIAVNGDLEGNPQLVNSDPYGEGWLVELQTETESMQAGLASLLDAEGY 125          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_MYCBO6.309e-2645.90Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_PYRHO8.240e-2651.26Probable glycine cleavage system H protein OS=Pyro... [more]
GCSH_DINSH8.240e-2645.54Glycine cleavage system H protein OS=Dinoroseobact... [more]
GCSH_CORJK8.240e-2647.90Glycine cleavage system H protein OS=Corynebacteri... [more]
GCSH_PROMA1.076e-2542.37Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_KOCRD1.076e-2544.26Glycine cleavage system H protein OS=Kocuria rhizo... [more]
GCSH_BRAJA1.076e-2547.32Glycine cleavage system H protein OS=Bradyrhizobiu... [more]
GCSH_BART11.076e-2544.64Glycine cleavage system H protein OS=Bartonella tr... [more]
GCSH_NEIG11.406e-2546.55Glycine cleavage system H protein OS=Neisseria gon... [more]
GCSH_MYCVP1.406e-2547.06Glycine cleavage system H protein OS=Mycobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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