CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ACICJ (Glycine cleavage system H protein OS=Acidiphilium cryptum (strain JF-5) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKF 362
            + +++  HEWV++DG+ AT+GITDHAQ  LGDVV+VELPE G  V  G +   VESVKA SDV +P++G V E N  L+  P +VN+      W  ++ +D       L+ AD Y  F
Sbjct:    3 ETRFSKDHEWVRLDGDVATVGITDHAQSALGDVVFVELPETGRHVDAGEACAVVESVKAASDVYAPLAGTVTEANGALADDPGMVNAQAESGAWFFRMTLDDRAAFDALLTADDYQAF 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STRGG (Glycine cleavage system H protein OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=gcvH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.131e-25
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 3
Query:    6 KDLKYADSHEWVK-VDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKF 362
            + L+Y+  HEW+  ++   ATIGIT++A + LGDVVY +LPEVG TV  G + G +ES K+ SD+ SPV+G+V   N+++   P+LVNS+P++ GW+ KV +  A E   L+ AD+YT F
Sbjct:    5 QQLRYSKEHEWLSALEDGVATIGITEYAANALGDVVYAQLPEVGDTVTAGETCGELESTKSVSDLYSPVTGEVTAANQDVVDDPSLVNSAPFEGGWLFKVRV--AEEPADLLSADEYTAF 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_NITEU (Glycine cleavage system H protein OS=Nitrosomonas europaea GN=gcvH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.131e-25
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKY +SHEWV+++ + S T+GIT HAQ+ LGD+V+V+LP+VG  + Q      VESVKA SD+ +P+ G+V+ VN E+ +SP  +N   Y   W+ K++  +AGE+  L+DA  Y K  + E
Sbjct:    6 ELKYTESHEWVRLEADGSVTVGITQHAQELLGDMVFVQLPDVGRALAQREDCAVVESVKAASDIYAPLGGEVIAVNSEVETSPEKINEDCYA-AWLFKLKPANAGEVDGLLDAGGYQKLLDSE 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MYCS2 (Glycine cleavage system H protein OS=Mycobacterium smegmatis GN=gcvH PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.090e-25
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSAT-IGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKK----LMDADQY 353
            DL Y   HEWV   G+    +GITD+AQ  LGDVV+V+LP+VG  V  G +FG VES K+ SD+ +PV+ KVV VN +L  SP LVNS PY +GW++ + ++ AG L +    L+DA+ Y
Sbjct:    7 DLYYTSEHEWVLRTGDDTVRVGITDYAQSALGDVVFVQLPDVGADVASGDAFGEVESTKSVSDLYAPVTAKVVAVNGDLEGSPELVNSDPYGEGWLVDLRVE-AGTLDEALGGLLDAEGY 125          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CHLP8 (Glycine cleavage system H protein OS=Chlorobaculum parvum (strain NCIB 8327) GN=gcvH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.090e-25
Identity = 54/123 (43.90%), Postives = 83/123 (67.48%), Query Frame = 3
Query:    9 DLKYADSHEWVKV--DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +L+Y   HEW+++  DG +A +GITD AQ  LGD+V+VE   VG  V    +FG VE+VK  +D+ +PV+G++VEVN  L  + A+VNS PY +GWI+K+++D+A E++ L+    Y+    E
Sbjct:    6 NLRYTKDHEWLQLLDDGVTAVVGITDFAQSELGDIVFVETKPVGTKVAAHGAFGTVEAVKTVADLFAPVAGEIVEVNGALDDA-AIVNSDPYNEGWIVKMKLDNAAEVESLLSPADYSALIGE 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CHLL2 (Glycine cleavage system H protein OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gcvH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.090e-25
Identity = 53/123 (43.09%), Postives = 81/123 (65.85%), Query Frame = 3
Query:    9 DLKYADSHEWVKV--DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            DL+Y   HEW+K+  DG++A +GITD AQ  LGD+V+VEL   G  +K    FG VE+VK  +D+ +PV+G+++EVN  L ++  +VN  PY +GW++K+ +D    L +L+DA  Y +   E
Sbjct:    6 DLRYTKDHEWIKLLEDGSAALVGITDFAQSELGDIVFVELKPAGTKLKAHEVFGTVEAVKTVADLFAPVAGEIMEVNGSLDAA-EVVNQDPYGEGWLVKIRIDDPASLAELLDAAAYRELIGE 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THEFY (Glycine cleavage system H protein OS=Thermobifida fusca (strain YX) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 58/122 (47.54%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L Y   HEWV ++   AT+GIT  A + LGD+VYVE PEVG TV  G S G +ES K+ S++ SPV G+VV+VN+     P L+ S PY  GW+ KVE+  A E   L+  +QYT+  E E
Sbjct:    6 ELGYTKEHEWVAINEGIATVGITAFAAEALGDIVYVEPPEVGSTVTAGESCGEIESHKSVSELYSPVDGEVVDVNQAAVDDPELIGSDPYGRGWLFKVEL--AEEPADLLTPEQYTQLTEGE 125          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_RHILO (Glycine cleavage system H protein OS=Rhizobium loti GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 3
Query:   18 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +   HEW++V+G  AT+GITD+AQ+ LGD+V+VELPE G  + +G +   VESVKA SDV +PV G++ E N  LSS P+LVNS+    GW+ K+ +    +L  LMD   Y
Sbjct:    9 FTSDHEWLRVEGGIATVGITDYAQEQLGDLVFVELPETGKKLTKGDTAVVVESVKAASDVYAPVDGEITEANGTLSSDPSLVNSAATGAGWLWKMRLADESQLAGLMDEAAY 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THICR (Glycine cleavage system H protein OS=Thiomicrospira crunogena (strain XCL-2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            LKYADSHEWV +D    A +GITD AQ+ LGD++ V LPEVG  + QG    ++ESVKA SD+ SP+SG+VV VN EL   P  VN  PY  GW+ K+      E+  L+    Y
Sbjct:    8 LKYADSHEWVYLDEEGHAVVGITDFAQESLGDLMDVHLPEVGADIDQGEEIMSLESVKAASDIFSPLSGEVVAVNTELEDEPERVNDEPYDGGWLFKLAPHDLSEMDDLLSDVDY 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THEVO (Probable glycine cleavage system H protein OS=Thermoplasma volcanium GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCE 368
            LKY  +HEW KVD   AT+GITD+AQ  + D+VYV+LPEVG   K G     +ESVK+  DV SP++G++ EVN+EL+  P  +N  PY   W++K++++  GE    + A+QY K  +
Sbjct:    8 LKYTKTHEWYKVDNGIATVGITDYAQSQMTDIVYVDLPEVGDKKKVGDVLLTIESVKSAEDVYSPLTGEITEVNQELTKHPENINKDPY-GNWLVKMKVEKEGE---YLTAEQYRKLIQ 122          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_ACICJ2.398e-2544.92Glycine cleavage system H protein OS=Acidiphilium ... [more]
GCSH_STRGG3.131e-2546.67Glycine cleavage system H protein OS=Streptomyces ... [more]
GCSH_NITEU3.131e-2544.72Glycine cleavage system H protein OS=Nitrosomonas ... [more]
GCSH_MYCS24.090e-2549.17Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_CHLP84.090e-2543.90Glycine cleavage system H protein OS=Chlorobaculum... [more]
GCSH_CHLL24.090e-2543.09Glycine cleavage system H protein OS=Chlorobium li... [more]
GCSH_THEFY5.341e-2547.54Glycine cleavage system H protein OS=Thermobifida ... [more]
GCSH_RHILO5.341e-2548.21Glycine cleavage system H protein OS=Rhizobium lot... [more]
GCSH_THICR6.976e-2549.57Glycine cleavage system H protein OS=Thiomicrospir... [more]
GCSH_THEVO6.976e-2545.38Probable glycine cleavage system H protein OS=Ther... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
back to top