CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACC1 (Glycine cleavage system H protein OS=Bacillus cereus (strain ATCC 10987) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQSELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_AERS4 (Glycine cleavage system H protein OS=Aeromonas salmonicida (strain A449) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKYA SHEW++V+ N  A +GIT+HAQD LGD+V+V+LPEVG  +  G      ESVKA SD+ SPVSG++V +NEEL  SP LVNS PY  GW+ ++++D AGEL  L+DA+ Y    +EE
Sbjct:    7 ELKYATSHEWIRVEANGEAVVGITEHAQDLLGDMVFVDLPEVGKQIGAGDDCAVAESVKAASDIYSPVSGEIVAINEELEGSPELVNSDPYGAGWLFRIKLDDAGELANLLDAEGYQNLVDEE 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVY (Glycine cleavage system H protein OS=Vibrio vulnificus (strain YJ016) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.163e-34
Identity = 68/124 (54.84%), Postives = 93/124 (75.00%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   ++ G SF  VESVKA SD+ +PV+G+VVEVNEELS SP L+N  PY+ GWI+KV++    EL  L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVU (Glycine cleavage system H protein OS=Vibrio vulnificus GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.163e-34
Identity = 68/124 (54.84%), Postives = 93/124 (75.00%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   ++ G SF  VESVKA SD+ +PV+G+VVEVNEELS SP L+N  PY+ GWI+KV++    EL  L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACHD (Glycine cleavage system H protein OS=Bacillus halodurans GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.163e-34
Identity = 68/122 (55.74%), Postives = 89/122 (72.95%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKY++ HEWVKV+G+   IGITD AQ  LGD+V+VELPEVG  V+    FG+VESVK  S++ +PVSGKVVEVNEEL  +P  VN SPY+  W+I VE   A ++++LM AD+Y +   EE
Sbjct:    7 ELKYSEEHEWVKVEGDKVRIGITDFAQSELGDIVFVELPEVGDEVEADEPFGSVESVKTVSELYAPVSGKVVEVNEELDDNPEYVNESPYEKAWMIVVEPSDASQVEELMSADEYKEMISEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACC2 (Glycine cleavage system H protein OS=Bacillus cereus (strain G9842) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.163e-34
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +L+Y++ HEWVK +GN   IGIT  AQ  LGD+V+VELPEVG T++    FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPY+  W++KVE+  A +++KL+ A++Y +   ++
Sbjct:    6 NLRYSEEHEWVKTEGNEVVIGITHFAQGELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBPA (Glycine cleavage system H protein OS=Vibrio parahaemolyticus GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.826e-34
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K LK+ DSHEWV+ +G+ + TIGI++HAQ+ LGDVV+V+LP+V   V+ G SF  VESVKA SD+ SPV+G+VVE+NEEL  SP L+N  PY+ GWI+KV++    EL  L DA++Y    EEE
Sbjct:    3 KTLKFTDSHEWVRDNGDGTVTIGISEHAQEMLGDVVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPVTGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAW (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MW2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.826e-34
Identity = 64/121 (52.89%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +++ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAS (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MSSA476) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.826e-34
Identity = 64/121 (52.89%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +++ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THEMA (Glycine cleavage system H protein OS=Thermotoga maritima GN=gcvH PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.690e-34
Identity = 64/124 (51.61%), Postives = 90/124 (72.58%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +K  KY  +HEWV ++   AT+GIT+HAQ+ LGDVVYV+LPEVG  VK+G    ++ESVKA +DV +P+SGK+VEVNE+L + P L+N  P  +GW+ K+E+   GEL+ L+D   Y +FC +E
Sbjct:    1 MKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 124          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_BACC11.656e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_AERS41.656e-3454.47Glycine cleavage system H protein OS=Aeromonas sal... [more]
GCSH_VIBVY2.163e-3454.84Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_VIBVU2.163e-3454.84Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_BACHD2.163e-3455.74Glycine cleavage system H protein OS=Bacillus halo... [more]
GCSH_BACC22.163e-3452.46Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_VIBPA2.826e-3455.65Glycine cleavage system H protein OS=Vibrio paraha... [more]
GCSH_STAAW2.826e-3452.89Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAS2.826e-3452.89Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_THEMA3.690e-3451.61Glycine cleavage system H protein OS=Thermotoga ma... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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