CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291022_ssr281 microsatellite CX291022_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MARMS (Glycine cleavage system H protein OS=Marinomonas sp. (strain MWYL1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.550e-32
Identity = 65/118 (55.08%), Postives = 90/118 (76.27%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYT 356
            ++LKYADSHEWV  +G+ + T+GITDHAQD LGDVVYVELPEVG  V     F  VESVKA SD+ +PV+G+V+EVN+ L+ +P L+N +P++  WI K+++ +A +L KL+DA  Y+
Sbjct:    6 ENLKYADSHEWVLDNGDGTVTVGITDHAQDLLGDVVYVELPEVGTEVTATEQFSLVESVKAASDIYAPVNGEVIEVNDALNDAPELINEAPFEGAWIAKIKLSNAADLDKLLDAAGYS 123          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_GEOSW (Glycine cleavage system H protein OS=Geobacillus sp. (strain WCH70) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.550e-32
Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            K+L+Y++ HEWV+V+G+   IGITD AQ  LGD+V+VELPEVG  +     FG+VESVK  S++ +P+SGKVVEVNEEL+ +P  VN SPY+  W+I VE     E+  L+ A+QY +  +E
Sbjct:    5 KELRYSEEHEWVRVEGDKVRIGITDFAQSELGDIVFVELPEVGAEITANEPFGSVESVKTVSELYAPISGKVVEVNEELNDNPEYVNESPYEKAWMIVVEPYDMSEIDNLLTAEQYEEMVKE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBF1 (Glycine cleavage system H protein OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.645e-32
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            KDLK+  SHEWV+ +G+ + T+GI+DHAQ  LGDVV+V+LPEV   V  G  F  VESVKA SD+ SPV+G +VE+NEEL  SP LVN  PY+ GWI ++++  + EL+ L+ +D Y +  +EE
Sbjct:    3 KDLKFTTSHEWVRDNGDGTVTVGISDHAQGLLGDVVFVDLPEVDDEVTTGEGFSLVESVKAASDIYSPVTGVIVEINEELEDSPELVNEEPYESGWIARIKLSDSSELESLIPSDTYLESLDEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MYXXD (Glycine cleavage system H protein OS=Myxococcus xanthus (strain DK 1622) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.645e-32
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYT 356
            DLKY   HEW +V G S  +G+T HAQ+ LGDVVYVELP+VG TV +G  FG +ES KA S++ SP++GKVV+VN+ LS +P+ VN+ PY  GWI+++E     ++  LMDA  YT
Sbjct:    8 DLKYTREHEWARVQGTSVVVGVTQHAQESLGDVVYVELPKVGSTVTEGKQFGVIESTKAVSELYSPLTGKVVKVNDGLSDNPSTVNTDPYGAGWIVEIEPSDPKQVDGLMDAAAYT 123          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_HALLT (Probable glycine cleavage system H protein OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.645e-32
Identity = 63/115 (54.78%), Postives = 83/115 (72.17%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            D +Y +SHEWV   G++  IG++D AQD LGDVV+VELPE G  +  G +FG VES+KA SD+ +PVSG+VV VNEEL   P LVN  PY DGW+++VE    G+ + L+DAD+Y
Sbjct:    8 DRRYLESHEWVTTGGDTVRIGVSDFAQDELGDVVFVELPEAGDEITAGEAFGVVESIKAVSDLYAPVSGEVVAVNEELFDRPELVNEDPYGDGWLLEVEPVEGGDAEGLLDADEY 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ALKOO (Glycine cleavage system H protein OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.645e-32
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +  L Y+  HEWVKV+GN A IGITD AQ  LG++V+VELPEV   + QG +F  VESVKA SD  SPVSGKV+EVNEEL  +P L+N   + + WIIKVE+ +  EL+ L+   +Y +FCE+E
Sbjct:    4 VAGLLYSKDHEWVKVEGNEAYIGITDFAQHALGEIVFVELPEVDDEIAQGDAFSVVESVKAASDAYSPVSGKVLEVNEELDGAPELLNEDAFAN-WIIKVELTNPSELEGLLSDKEYAEFCEKE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ALISL (Glycine cleavage system H protein OS=Aliivibrio salmonicida (strain LFI1238) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.454e-32
Identity = 64/124 (51.61%), Postives = 90/124 (72.58%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            KDLK+  SHEWV+ +G+ + T+GI++HAQ  LGDVV+V+LP+V   V  G +F  VESVKA SD+ +P+SG +VE+NEEL  SP LVN  PY+ GWI ++++   G+L+ L+  DQY +  EEE
Sbjct:    3 KDLKFTASHEWVRENGDGTVTVGISNHAQGLLGDVVFVDLPDVDDEVTAGENFSLVESVKAASDIYAPISGVIVEINEELEDSPELVNEEPYEGGWIARIKLSDDGDLENLIPGDQYLESIEEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_LISW6 (Glycine cleavage system H protein OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.511e-32
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +G S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY  GWI+K+      ++  L+ +D Y K
Sbjct:    5 KDLLYTEEHEWVKADDGSYIIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLTEVEEADVTALLSSDDYEK 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_HALOH (Glycine cleavage system H protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.511e-32
Identity = 60/122 (49.18%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            ++L Y  +HEW+KVDG++A +G+TD+AQ  LGD+V+VELPEV     Q   F  +ESVKA SDV  PV G+V+E NEEL  +P LVN  PY  GW++K+++    EL+ LM +++Y ++ EE
Sbjct:    5 ENLMYTKNHEWIKVDGDTALVGVTDYAQKELGDIVFVELPEVSDEFAQSEGFAVLESVKAVSDVYLPVGGEVLEANEELLENPELVNQEPYASGWLVKIKLADKKELEDLMSSEEYARYLEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_KLEP3 (Glycine cleavage system H protein OS=Klebsiella pneumoniae (strain 342) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.892e-32
Identity = 62/123 (50.41%), Postives = 87/123 (70.73%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKY+  HEW++ + +   T+GIT+HAQ+ LGD+V+V+LPEVG TV+ GA     ESVKA SD+ +P+SG++V VNEEL+ SP LVNS PY DGWI K++     ++  L+DA  Y    E+E
Sbjct:    7 ELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYSDGWIFKIKASDEAQVAALLDATAYEALLEDE 129          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_MARMS1.550e-3255.08Glycine cleavage system H protein OS=Marinomonas s... [more]
GCSH_GEOSW1.550e-3251.64Glycine cleavage system H protein OS=Geobacillus s... [more]
GCSH_VIBF12.645e-3252.42Glycine cleavage system H protein OS=Vibrio fische... [more]
GCSH_MYXXD2.645e-3253.45Glycine cleavage system H protein OS=Myxococcus xa... [more]
GCSH_HALLT2.645e-3254.78Probable glycine cleavage system H protein OS=Halo... [more]
GCSH_ALKOO2.645e-3254.84Glycine cleavage system H protein OS=Alkaliphilus ... [more]
GCSH_ALISL3.454e-3251.61Glycine cleavage system H protein OS=Aliivibrio sa... [more]
GCSH_LISW64.511e-3255.08Glycine cleavage system H protein OS=Listeria wels... [more]
GCSH_HALOH4.511e-3249.18Glycine cleavage system H protein OS=Halothermothr... [more]
GCSH_KLEP35.892e-3250.41Glycine cleavage system H protein OS=Klebsiella pn... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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