CX291023

Overview
NameCX291023
Unique NameCX291023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12075 contig Ccv1_Contig12075:55..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBP (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  253 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            R  YEVLGVS+  +D EIKSAYRK+A+KYHPDKN  D  A + FKE T +Y +L DP KR+ YD  G
Sbjct:    4 RGYYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFG 70          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBA (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  253 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            R  YEVLGVS+  +D EIKSAYRK+A+KYHPDKN  D  A + FKE T +Y +L DP KR+ YD  G
Sbjct:    4 RGYYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFG 70          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_HALOH (Chaperone protein dnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  253 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +D YE+LGVSR+   +EIK AYR++A KYHPD N +DP A + FKE + +Y ILSDPDKR +YD  G   +
Sbjct:    5 KDYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKRARYDQYGHAGI 75          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLP8 (Chaperone protein dnaJ OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            ++RD YE+LGVSR+    EIK AYRK+ALKYHPDKN ++  A + FKE   +Y +LS+ DKRR+YD  G   V
Sbjct:    1 MKRDYYEILGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEANEAYEVLSNDDKRRRYDQFGHAGV 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIAD (Chaperone protein dnaJ OS=Acinetobacter sp. (strain ADP1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            +RD YEVLGVS+  +D EIK AYRK+A+KYHPD+N ++  A D FKE + +Y +LSD +KR  YD  G  A
Sbjct:    3 KRDYYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEDKFKEASEAYEVLSDSEKRSMYDRMGHNA 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNFM (Chaperone protein dnaJ OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YE+LGV+R  +++EIK AYRK+ALKYHPD+N  D  + ++FKE   +Y +L D  K+R YDT G E +
Sbjct:    3 KRDYYEILGVTRQASEEEIKKAYRKLALKYHPDRNPGDKDSEELFKEAAEAYEVLHDAQKKRIYDTYGHEGL 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYA2 (Chaperone protein dnaJ OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            +RD YE+LGVS+   ++E+K AYRK+A+KYHPD+N++DP A D FKE + +Y +LS  +KR  YD  G  A
Sbjct:    3 KRDFYEILGVSKTADNKEVKRAYRKLAMKYHPDRNSDDPDAEDKFKEASMAYEVLSSEEKRSAYDRMGHAA 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPN (Chaperone protein dnaJ OS=Legionella pneumophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKL 549
            +RD YE+L VSRN +D EIK AYR++A+KYHPD+N  D  A + FKE   +YNILSD  KR  YD  G   V              G    +F  +F  +
Sbjct:    3 QRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFEDIFENI 102          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPL (Chaperone protein dnaJ OS=Legionella pneumophila (strain Lens) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKL 549
            +RD YE+L VSRN +D EIK AYR++A+KYHPD+N  D  A + FKE   +YNILSD  KR  YD  G   V              G    +F  +F  +
Sbjct:    3 QRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFEDIFENI 102          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPH (Chaperone protein dnaJ OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKL 549
            +RD YE+L VSRN +D EIK AYR++A+KYHPD+N  D  A + FKE   +YNILSD  KR  YD  G   V              G    +F  +F  +
Sbjct:    3 QRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFEDIFENI 102          
The following BLAST results are available for this feature:
BLAST of CX291023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_LEPBP3.909e-1659.70Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]
DNAJ_LEPBA3.909e-1659.70Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]
DNAJ_HALOH3.909e-1654.93Chaperone protein dnaJ OS=Halothermothrix orenii (... [more]
DNAJ_CHLP83.909e-1654.79Chaperone protein dnaJ OS=Chlorobaculum parvum (st... [more]
DNAJ_ACIAD3.909e-1654.93Chaperone protein dnaJ OS=Acinetobacter sp. (strai... [more]
DNAJ_SYNFM5.106e-1651.39Chaperone protein dnaJ OS=Syntrophobacter fumaroxi... [more]
DNAJ_PSYA25.106e-1652.11Chaperone protein dnaJ OS=Psychrobacter arcticus (... [more]
DNAJ_LEGPN5.106e-1643.00Chaperone protein dnaJ OS=Legionella pneumophila G... [more]
DNAJ_LEGPL5.106e-1643.00Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_LEGPH5.106e-1643.00Chaperone protein dnaJ OS=Legionella pneumophila s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003A10SK OF2 Citrus clementina cDNA clone C03003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291023 ID=CX291023; Name=CX291023; organism=Citrus clementina; type=EST; length=606bp
ATCAAGTCTAGTCTAGGGTTTCCTTATTCTTTTCTCACCAGTCTGTTATT
TTTCCGAGAAAAGATTAAGAAAAAAAAATGCGAGAGAATTTGGGAGGAAC
AATTGTTTGTTTTTCGTTTTCGTCTAAAAAAAATTTTCTGTCTCGGTAGT
GGTTTCTAGGGCCTTTGAGTGGAGTTTTTTCACGTTCTTTTATTGAAAAT
GCCGGCTCAACGATCCAAGTCCGAGAGAAGCGATGCGGGAAAGCAGCTCC
GGCGGGACCCCTACGAGGTTCTCGGCGTCTCCAGGAACTGTACGGATCAA
GAAATCAAGAGCGCCTACAGGAAAATGGCTCTAAAGTACCATCCTGATAA
GAATGCAAATGACCCTGTAGCAGCTGATATTTTTAAGGAGTTTACATTTT
CCTATAATATCTTGTCAGATCCTGACAAAAGACGACAGTATGACACCGCT
GGTTTTGAGGCTGTTGAATCAGAAAGTCAAGAATTGGAGCTAGATCTTTC
TAGTTTGGGAGCTGTGAACACCATGTTTGCTGCACTTTTTAGTAAACTTG
GTGTGCCAATCAAGACCACTGTATCGGCTACTGTCTTGGAGGAGGCACTT
AATGGC
back to top