CX291023

Overview
NameCX291023
Unique NameCX291023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12075 contig Ccv1_Contig12075:55..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPC (Chaperone protein dnaJ OS=Legionella pneumophila (strain Corby) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKL 549
            +RD YE+L VSRN +D EIK AYR++A+KYHPD+N  D  A + FKE   +YNILSD  KR  YD  G   V              G    +F  +F  +
Sbjct:    3 QRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFEDIFENI 102          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPA (Chaperone protein dnaJ OS=Legionella pneumophila (strain Paris) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKL 549
            +RD YE+L VSRN +D EIK AYR++A+KYHPD+N  D  A + FKE   +YNILSD  KR  YD  G   V              G    +F  +F  +
Sbjct:    3 QRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFEDIFENI 102          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRRW (Chaperone protein dnaJ OS=Ehrlichia ruminantium (strain Welgevonden) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            + D Y++LG+S+N T +EIK AYRKMALKYHPDKN  D  A + FKE + +Y++L D DKR  YD  G  A
Sbjct:    3 KSDYYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKDKRAAYDRYGHSA 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRRG (Chaperone protein dnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            + D Y++LG+S+N T +EIK AYRKMALKYHPDKN  D  A + FKE + +Y++L D DKR  YD  G  A
Sbjct:    3 KSDYYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKDKRAAYDRYGHSA 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTE (Chaperone protein dnaJ OS=Clostridium tetani GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            ++D YEVLGV +   D EIK A+RK+ALKYHPDKNA +  A + FKE   +Y +LSDP KR QYD  G
Sbjct:    3 KKDFYEVLGVEKGANDAEIKKAFRKLALKYHPDKNAGNKEAEERFKEINEAYQVLSDPQKRAQYDQFG 70          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_HYPNA (Chaperone protein dnaJ OS=Hyphomonas neptunium (strain ATCC 15444) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            +RD YEVLGV R   ++ +KSAYRK+A+KYHPD+NA D  A D FKE   +Y ILSDP KR  YD  G  A
Sbjct:    3 KRDYYEVLGVERGVDEKALKSAYRKLAMKYHPDQNAGDTAAEDKFKEVGEAYAILSDPQKRAAYDRYGHGA 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOPH (Chaperone protein dnaJ OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKL 549
            +RD YEVLG+S++ +D EIK AYRK+A +YHPD N  D  A   FKE + +Y +LSDP+K+RQ+D  G  A               G +  +F  +F  +
Sbjct:    4 KRDYYEVLGISKSASDDEIKKAYRKLAKQYHPDANPGDQTAEAKFKEASEAYAVLSDPEKKRQFDQFGHAAFEQGGGGAGGFDFNMGDMGDIFGDIFGDI 103          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLTE (Chaperone protein dnaJ OS=Chlorobium tepidum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            ++RD YE+LGV+R+    EIK AYRK+ALKYHPDKN ++  A + FKE   +Y +LS+ DKRR+YD  G   V
Sbjct:    1 MKRDYYEILGVARSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLL2 (Chaperone protein dnaJ OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAV--NTMFAALFSKLG 552
            +++D YEVLGVSR+ +  EIK AYRK+AL+YHPDKN ++  A + FKE   +Y +LS+ DKRR+YD  G   V              GA   N +F+A     G
Sbjct:    1 MKKDYYEVLGVSRSASKDEIKKAYRKLALQYHPDKNPDNKDAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGAGGAYAGGATDFNDIFSAFNDMFG 104          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_PROVI (Chaperone protein dnaJ OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.709e-16
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +++D YE+LGV R+    EIK AYRK+ALKYHPDKN ++  A D FKE   +Y +LS+ DKRR+YD  G   V
Sbjct:    1 MKKDYYEILGVGRSADKDEIKKAYRKLALKYHPDKNPDNKDAEDHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73          
The following BLAST results are available for this feature:
BLAST of CX291023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_LEGPC5.106e-1643.00Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_LEGPA5.106e-1643.00Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_EHRRW5.106e-1654.93Chaperone protein dnaJ OS=Ehrlichia ruminantium (s... [more]
DNAJ_EHRRG5.106e-1654.93Chaperone protein dnaJ OS=Ehrlichia ruminantium (s... [more]
DNAJ_CLOTE5.106e-1657.35Chaperone protein dnaJ OS=Clostridium tetani GN=dn... [more]
DNAJ_HYPNA6.668e-1657.75Chaperone protein dnaJ OS=Hyphomonas neptunium (st... [more]
DNAJ_CLOPH6.668e-1641.00Chaperone protein dnaJ OS=Clostridium phytoferment... [more]
DNAJ_CHLTE6.668e-1653.42Chaperone protein dnaJ OS=Chlorobium tepidum GN=dn... [more]
DNAJ_CHLL26.668e-1643.27Chaperone protein dnaJ OS=Chlorobium limicola (str... [more]
DNAJ_PROVI8.709e-1653.42Chaperone protein dnaJ OS=Prosthecochloris vibriof... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003A10SK OF2 Citrus clementina cDNA clone C03003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291023 ID=CX291023; Name=CX291023; organism=Citrus clementina; type=EST; length=606bp
ATCAAGTCTAGTCTAGGGTTTCCTTATTCTTTTCTCACCAGTCTGTTATT
TTTCCGAGAAAAGATTAAGAAAAAAAAATGCGAGAGAATTTGGGAGGAAC
AATTGTTTGTTTTTCGTTTTCGTCTAAAAAAAATTTTCTGTCTCGGTAGT
GGTTTCTAGGGCCTTTGAGTGGAGTTTTTTCACGTTCTTTTATTGAAAAT
GCCGGCTCAACGATCCAAGTCCGAGAGAAGCGATGCGGGAAAGCAGCTCC
GGCGGGACCCCTACGAGGTTCTCGGCGTCTCCAGGAACTGTACGGATCAA
GAAATCAAGAGCGCCTACAGGAAAATGGCTCTAAAGTACCATCCTGATAA
GAATGCAAATGACCCTGTAGCAGCTGATATTTTTAAGGAGTTTACATTTT
CCTATAATATCTTGTCAGATCCTGACAAAAGACGACAGTATGACACCGCT
GGTTTTGAGGCTGTTGAATCAGAAAGTCAAGAATTGGAGCTAGATCTTTC
TAGTTTGGGAGCTGTGAACACCATGTTTGCTGCACTTTTTAGTAAACTTG
GTGTGCCAATCAAGACCACTGTATCGGCTACTGTCTTGGAGGAGGCACTT
AATGGC
back to top