CX291025

Overview
NameCX291025
Unique NameCX291025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig345 contig Ccv1_Contig345:313..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSJ (Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 91/181 (50.28%), Postives = 125/181 (69.06%), Query Frame = 3
Query:    9 PYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCS--ENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            P+ +TIHWHG+ Q+RS WADG   IT+CPI PG+  TY+F + +Q GTLWWHAH++ LR+T++GAFIIRP+ G KYPFP P K+VPI++GEWW  D++++  R            A TING+ GDL  CS    +++ L V+ G++YLLR+IN A  ++ +FK+A H FTVV  D  Y  P
Sbjct:   75 PHGLTIHWHGVRQLRSCWADGAGFITECPIPPGSERTYRFNVTDQVGTLWWHAHVTCLRSTINGAFIIRPRDG-KYPFPTPVKDVPIIIGEWWELDLVELDRRMRDGNFDDNPLSA-TINGKLGDLSNCSGIVEESFVLNVKHGESYLLRVINTAFFSEYYFKVAGHTFTVVGADGNYLTP 253          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 91/181 (50.28%), Postives = 125/181 (69.06%), Query Frame = 3
Query:    9 PYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCS--ENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            P+ +TIHWHG+ Q+RS WADG   IT+CPI PG+  TY+F + +Q GTLWWHAH++ LR+T++GAFIIRP+ G KYPFP P K+VPI++GEWW  D++++  R            A TING+ GDL  CS    +++ L V+ G++YLLR+IN A  ++ +FK+A H FTVV  D  Y  P
Sbjct:   75 PHGLTIHWHGVRQLRSCWADGAGFITECPIPPGSERTYRFNVTDQVGTLWWHAHVTCLRSTINGAFIIRPRDG-KYPFPTPVKDVPIIIGEWWELDLVELDRRMRDGNFDDNPLSA-TINGKLGDLSNCSGIVEESFVLNVKHGESYLLRVINTAFFSEYYFKVAGHTFTVVGADGNYLTP 253          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 91/181 (50.28%), Postives = 128/181 (70.72%), Query Frame = 3
Query:    9 PYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSE--NQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            P+ +TIHWHG+ Q+RS WADG   +T+CPI PG   TY+F +  Q GTLWWHAH++ LRAT++GAFIIRP++G KYPF  P K+VPI++GEWW  D++++ +R  + G       + TING+ GDL  CS    +++ L V++G++YLLR+IN AL ++ +FK+A H FTVV  D  Y  P
Sbjct:   81 PHGLTIHWHGVRQMRSCWADGAGYVTECPIHPGGEKTYRFNVTGQVGTLWWHAHVTCLRATINGAFIIRPRNG-KYPFLTPAKDVPIIIGEWWELDLIEL-DRRMLDGNFDDNPLSATINGKLGDLSNCSSTVEESFVLDVKRGESYLLRVINTALFSEYYFKVAGHTFTVVGADGNYLTP 259          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC16_ORYSJ (Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.905e-42
Identity = 82/173 (47.40%), Postives = 104/173 (60.12%), Query Frame = 3
Query:   27 HWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            H HG+ Q R+ W+DGP  ITQCPIRP  ++TY+  +  +EGTLWWHAH    RATVHGA +I PK G  +PF KPDKE+PI+L EWWNDD+ +V +  + TG               GD               +G TYLLR+IN  L N +FF +A H  TVV++DA YT P
Sbjct:   22 HRHGVDQPRNPWSDGPEFITQCPIRPCGNFTYQVILFEEEGTLWWHAHSDFDRATVHGAIVIHPKHGTTFPFNKPDKEIPIILSEWWNDDVENVLDEAKRTG---------------GD---------------QGNTYLLRVINTGLTNDMFFAVAGHCLTVVSIDARYTKP 164          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC3_THACU (Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 67/180 (37.22%), Postives = 98/180 (54.44%), Query Frame = 3
Query:   21 TIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGR---PGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            +IHWHG+ Q R+   DGP  +TQCPI P  SYTY   + +Q GT W+H+H+S      + G  +I  PK  H+  +   D++  +++G+W++     +   G IT   P   D+ TING+     D  P + N  Y LKV++GK Y LR+IN++        I  HK TV+A D   T P
Sbjct:   80 SIHWHGLLQHRNADDDGPAFVTQCPIVPQASYTYTMPLGDQTGTYWYHSHLSSQYVDGLRGPLVIYDPKDPHRRLYDIDDEKTVLIIGDWYHTSSKAILATGNITLQQP---DSATINGKGRFDPDNTPANPNTLYTLKVKRGKRYRLRVINSSAIASFRMSIQGHKMTVIAADGVSTKP 256          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC1_THACU (Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 65/180 (36.11%), Postives = 100/180 (55.56%), Query Frame = 3
Query:   21 TIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGR---PGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            +IHWHG+ Q R+   DGP+ +TQCPI P  SYTY   + +Q GT W+H+H+S      + G  +I  PK  H+  +   D++  +++G+W+++    +   G IT   P    + TING+     D  P + +  Y LKV++GK Y LR+IN++      F +  HK TV+A D   T P
Sbjct:   80 SIHWHGLLQHRNADDDGPSFVTQCPIVPRESYTYTIPLDDQTGTYWYHSHLSSQYVDGLRGPLVIYDPKDPHRRLYDVDDEKTVLIIGDWYHESSKAILASGNITRQRP---VSATINGKGRFDPDNTPANPDTLYTLKVKRGKRYRLRVINSSEIASFRFSVEGHKVTVIAADGVSTKP 256          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC2_THACU (Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 64/184 (34.78%), Postives = 91/184 (49.46%), Query Frame = 3
Query:   21 TIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSEN-------QTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            TIHWHG+ Q R+   DGP  +TQCPI P  SYTY   +  Q GT W+H+H+S      + G  +I  P   ++  +   D+     L +W++     +    ++      I D+ TING+ G   P S N         Y LKV++GK Y LRIINA+      F +  HK T++  D   T P
Sbjct:   80 TIHWHGLLQHRTAEEDGPAFVTQCPIPPQESYTYTMPLGEQTGTYWYHSHLSSQYVDGLRGPIVIYDPHDPYRNYYDVDDERTVFTLADWYHTPSEAIIATHDVL---KTIPDSGTINGK-GKYDPASANTNNTTLENLYTLKVKRGKRYRLRIINASAIASFRFGVQGHKCTIIEADGVLTKP 259          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC1_AGABI (Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.860e-22
Identity = 59/183 (32.24%), Postives = 93/183 (50.82%), Query Frame = 3
Query:   15 NITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGR----PGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            +++IHWHG FQ R+   DGP+ + QCP  P  ++TY+F +  Q GT W+H+H+S      + GAFI+  P+   ++ +   D+   I L EW++    D  N    +G+ P + D+  ING+     G L P +      + V +GK Y LR+I  +      F + NH    +  D    DP
Sbjct:   78 SVSIHWHGFFQARTSGQDGPSFVNQCPQPPNTTFTYEFSVAEQSGTFWYHSHLSTQYCDGLRGAFIVYDPRDPLRHLYDVDDESTVITLAEWYHILAPDATNEFFSSGIIP-VQDSGLINGKGRFNGGPLTPFA-----VVNVRRGKRYRLRVIAISCRPFFTFSVDNHSLVFMEADGVEHDP 254          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC2_AGABI (Laccase-2 OS=Agaricus bisporus GN=lcc2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 57/179 (31.84%), Postives = 93/179 (51.96%), Query Frame = 3
Query:   15 NITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            +++IHWHG FQ R+   DGP  + QCP  P  ++TY+F + ++ GT W+H+H+S      + GAF++  P+    + +   D+   I L EW++    D+ N    +G+ P + D+  ING+ G      E     + VE+GK Y  R+I  +      F + NH  T +  D+   DP
Sbjct:   78 SVSIHWHGFFQARTSGQDGPAFVNQCPQPPNTTFTYEFSVADESGTFWYHSHLSTQYCDGLRGAFVVYDPEDPLGHLYDVDDETTVITLAEWYHVLAPDINNEFFSSGIIP-VQDSGLINGK-GRFNGGPETPFAVVNVEQGKRYRFRVIAISCRPFFTFSVDNHNLTFMEADSVEHDP 254          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: ASO_CUCSA (L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21
Identity = 62/194 (31.96%), Postives = 101/194 (52.06%), Query Frame = 3
Query:   18 ITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLR-ATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDI----MDVANR-----GE-----ITGVGP---RISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            + IHWHGI Q  + WADG   I+QC I PG ++TY+F ++++ GT ++H H+ M R A ++G+ I+ P  G   PF   D+E+ ++L +WW+  +    + ++++     GE     I G G     I+  +    +  +L    +   + L V+  KTY +RI +      L F I NH+  VV  D  Y  P
Sbjct:   92 VVIHWHGILQRGTPWADGTASISQCAINPGETFTYRF-VVDKAGTYFYHGHLGMQRSAGLYGSLIVDPPEGRSEPF-HYDEEINLLLSDWWHQSVHKQEVGLSSKPMRWIGEPQSILINGKGQFDCSIAAKYNQGLKQCELSGKEKCAPFILHVQPKKTYRIRIASTTALASLNFAIGNHELLVVEADGNYVQP 283          
The following BLAST results are available for this feature:
BLAST of CX291025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
LAC20_ORYSJ1.114e-5050.28Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC20_ORYSI1.114e-5050.28Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
LAC18_ORYSJ1.114e-5050.28Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC16_ORYSJ1.905e-4247.40Putative laccase-16 OS=Oryza sativa subsp. japonic... [more]
LAC3_THACU5.037e-2737.22Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 ... [more]
LAC1_THACU5.037e-2736.11Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 ... [more]
LAC2_THACU7.526e-2334.78Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 ... [more]
LAC1_AGABI2.860e-2232.24Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1[more]
LAC2_AGABI3.735e-2231.84Laccase-2 OS=Agaricus bisporus GN=lcc2 PE=1 SV=1[more]
ASO_CUCSA1.854e-2131.96L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC03003A12SK OF2 Citrus clementina cDNA clone C03003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291025 ID=CX291025; Name=CX291025; organism=Citrus clementina; type=EST; length=547bp
ACGAGTCGCCTTATAACATCACTATTCACTGGCATGGAATATTTCAGATT
CGAAGCATCTGGGCAGATGGACCAAACATGATAACTCAGTGTCCAATAAG
ACCTGGAAATAGCTACACTTACAAATTTAGAATCATCAATCAAGAAGGAA
CCCTTTGGTGGCATGCTCACATCTCAATGCTGCGAGCCACCGTCCACGGT
GCTTTTATCATCCGCCCTAAGTCTGGTCACAAGTATCCATTTCCTAAACC
CGATAAAGAAGTTCCCATTGTTCTCGGAGAGTGGTGGAATGACGATATCA
TGGATGTTGCCAACCGAGGGGAAATTACCGGTGTAGGTCCTAGAATTTCC
GATGCTTTCACCATCAATGGAAGGCCTGGAGACCTCTATCCCTGCTCGGA
AAATCAAACATACAAGCTTAAGGTTGAGAAAGGGAAGACCTATCTCCTAC
GTATTATCAACGCTGCACTCAATAACCAGCTCTTCTTCAAGATAGCCAAC
CACAAATTTACAGTCGTCGCCGTTGACGCTGGGTACACTGATCCCTA
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