CX291025

Overview
NameCX291025
Unique NameCX291025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig345 contig Ccv1_Contig345:313..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC1_NEUCR (Laccase OS=Neurospora crassa GN=lacc PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 55/179 (30.73%), Postives = 81/179 (45.25%), Query Frame = 3
Query:   21 TIHWHGIFQIRSIWADGPNMITQCPIRP-GNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKY-----PFPKPDKEVPIVLGEWWNDDIMDVANRGEI--TGVGPRISDAFTINGRPGDLYPCS-ENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVD 527
            +IHWHG+ Q  S   DG N +T+CPI P G S  Y++R   Q GT W+H+H S      + G  +I   +   Y     PFP               D   D A+R  +     GP  S+    NG     +P +   Q   + + KGK + LR+IN ++ N     + NH  T+++ D
Sbjct:  142 SIHWHGMHQRNSNIQDGVNGVTECPIPPRGGSKVYRWR-ATQYGTSWYHSHFSAQYGNGIVGPIVINGPASANYDVDLGPFP-------------LTDYYYDTADRLVLLTQHAGPPPSNNVLFNGFA--KHPTTGAGQYATVSLTKGKKHRLRLINTSVENHFQLSLVNHSMTIISAD 304          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC2_PODAN (Laccase-2 OS=Podospora anserina GN=LAC2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 54/179 (30.17%), Postives = 78/179 (43.58%), Query Frame = 3
Query:   21 TIHWHGIFQIRSIWADGPNMITQCPIRP-GNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKYP-----FPKPD---KEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVD 527
            +IHWHG+ Q  +   DG N +T+CPI P G S  Y+FR   Q GT W+H+H S      V G  ++   +   Y      FP  D   K   +++ E  N               GP  SD     G  G        +   + +  GK + LRIIN + ++    K+ NH  T++A D
Sbjct:  136 SIHWHGLHQKGTNMHDGANGVTECPIPPKGGSRIYRFR-AQQYGTSWYHSHFSAQYGNGVVGTIVVNGPASVPYDIDLGVFPITDYYHKPADVLVEETMNG--------------GPPPSDTVLFKGH-GKNPQTGAGKFANVTLTPGKRHRLRIINTSTHDHFQLKLQNHTMTIIAAD 298          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: LAC1_MELAO (Laccase-1 OS=Melanocarpus albomyces GN=LAC1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 55/173 (31.79%), Postives = 77/173 (44.51%), Query Frame = 3
Query:   21 TIHWHGIFQIRSIWADGPNMITQCPIRP-GNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWN--DDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVD 527
            +IHWHGI Q  +   DG N +T+CPI P G   TY++R   Q GT W+H+H S      V G   I   +   Y     D  V  +   ++   DD++            P  SD   ING   +     E Q   + +  GK + LRI+N +  N     + NH  TV+A D
Sbjct:  141 SIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWR-ARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDI---DLGVFPITDYYYRAADDLVHFTQNN-----APPFSDNVLINGTAVN-PNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAAD 303          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.977e-12
Identity = 53/176 (30.11%), Postives = 81/176 (46.02%), Query Frame = 3
Query:   21 TIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAH-ISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP 545
            ++H HG+FQ  + + DG    TQC I PG ++ Y +  + Q GT W H+H +S     +   FII       Y +   D+E  I + +W+      +      T   P  ++     G    L+  + N T+ +  E GKTY LR IN    N     I +H  T++ VD  YT+P
Sbjct:   83 SLHSHGLFQKFTPYMDGVPQSTQCEIPPGATFYYNYTAL-QNGTYWVHSHDMSQYPDGLRTPFIINALE-EPYDY---DEEYIISMTDWYYTPFNILVPDEFKTWKNPTGAEPVPDTG----LFNDTANATFAM--EPGKTYRLRFINIGAFNNYDVMIEDHNMTIIEVDGEYTEP 247          
BLAST of CX291025 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 46/183 (25.14%), Postives = 85/183 (46.45%), Query Frame = 3
Query:    3 ESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWN---DDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYT 539
            + P+  T  W+G+   ++ W DG    T CPI PG ++TY+F++ +Q G+  +    ++ RA   +GA  +  ++    PF  P  E  + +G+W+N     +  + + G   G      D   ING+   +    E +     +E GKTY  R  N  + + +  +   H   +V ++  +T
Sbjct:   75 DEPFLFT--WNGVQHRKNSWQDGTPG-TMCPIMPGQNFTYRFQVKDQIGSYSYFPTTALHRAAGGYGALNVHSRALIPVPFDNPADEYNVFVGDWYNKGHKTLKKILDGGRTIG----RPDGIIINGKSAKV---GEAKEPLFTMEAGKTYRYRFCNLGMRSSVNIRFQGHPMKLVELEGSHT 247          
The following BLAST results are available for this feature:
BLAST of CX291025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
LAC1_NEUCR1.573e-1230.73Laccase OS=Neurospora crassa GN=lacc PE=1 SV=3[more]
LAC2_PODAN2.683e-1230.17Laccase-2 OS=Podospora anserina GN=LAC2 PE=2 SV=1[more]
LAC1_MELAO4.577e-1231.79Laccase-1 OS=Melanocarpus albomyces GN=LAC1 PE=1 S... [more]
FIO1_SCHPO5.977e-1230.11Iron transport multicopper oxidase fio1 OS=Schizos... [more]
ASOL_TOBAC7.807e-1225.14L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]

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Properties
Property NameValue
Genbank descriptionC03003A12SK OF2 Citrus clementina cDNA clone C03003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291025 ID=CX291025; Name=CX291025; organism=Citrus clementina; type=EST; length=547bp
ACGAGTCGCCTTATAACATCACTATTCACTGGCATGGAATATTTCAGATT
CGAAGCATCTGGGCAGATGGACCAAACATGATAACTCAGTGTCCAATAAG
ACCTGGAAATAGCTACACTTACAAATTTAGAATCATCAATCAAGAAGGAA
CCCTTTGGTGGCATGCTCACATCTCAATGCTGCGAGCCACCGTCCACGGT
GCTTTTATCATCCGCCCTAAGTCTGGTCACAAGTATCCATTTCCTAAACC
CGATAAAGAAGTTCCCATTGTTCTCGGAGAGTGGTGGAATGACGATATCA
TGGATGTTGCCAACCGAGGGGAAATTACCGGTGTAGGTCCTAGAATTTCC
GATGCTTTCACCATCAATGGAAGGCCTGGAGACCTCTATCCCTGCTCGGA
AAATCAAACATACAAGCTTAAGGTTGAGAAAGGGAAGACCTATCTCCTAC
GTATTATCAACGCTGCACTCAATAACCAGCTCTTCTTCAAGATAGCCAAC
CACAAATTTACAGTCGTCGCCGTTGACGCTGGGTACACTGATCCCTA
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