CX291035

Overview
NameCX291035
Unique NameCX291035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: YIVG_SCHPO (UPF0195 protein C144.16 OS=Schizosaccharomyces pombe GN=SPAC144.16 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.780e-32
Identity = 70/135 (51.85%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   84 SSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDE---RSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 479
            S   N +   + ID QE++D +  I DPEHP +L +L V+  + IEV D     SY+ V  TPT+ HCSM T+IGLC+RV+L R LPPRF VD+ V  GTHA+E+ VNKQLNDKERVAAA EN  L+ +++  +A
Sbjct:   42 SEQTNIKEERDPIDPQEIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYITVHITPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQLLSVLNGMMA 176          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: U195B_DROME (UPF0195 protein CG30152 OS=Drosophila melanogaster GN=CG30152 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  126 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV----DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            Q+ ++D +R I+DPE P +LE+L V+ ED I V        S VR+ F PTV HCS+AT+IGLC+RVK+ R LP   K+DI +  G H TE  +NKQ+NDKER+AAA+ENPNL D+V+ C+
Sbjct:   94 QETIYDLLRGIRDPEKPCTLEDLNVVYEDGIFVMPPTRSNVSVVRIEFNPTVPHCSLATLIGLCIRVKVERGLPHNIKLDIYIKKGAHQTEEEINKQINDKERIAAAMENPNLRDLVENCI 214          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: YHS2_YEAST (UPF0195 protein YHR122W OS=Saccharomyces cerevisiae GN=YHR122W PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.968e-30
Identity = 68/143 (47.55%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   63 ERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD-----ERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            E    S +    +E   + ID QE++D +  I DPEHP SL +L V+  + I+V D     E + V +  TPT+ HCS+AT+IGL +RV+L RSLPPRF++ I++  GTH +E  VNKQLNDKERVAAA EN  L+ +V + L
Sbjct:   85 ESEDESVAGGGKEEEEPDLIDAQEIYDLIAHISDPEHPLSLGQLSVVNLEDIDVHDSGNQNEMAEVVIKITPTITHCSLATLIGLGIRVRLERSLPPRFRITILLKKGTHDSENQVNKQLNDKERVAAACENEQLLGVVSKML 227          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: FA96A_DICDI (UPF0195 protein FAM96A OS=Dictyostelium discoideum GN=fam96A PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.330e-28
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  120 IDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERS-------------------YVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            ID+ +VFD +R IKDPE P +LEELKV+ ED I V D                      ++++ F PTV HC +A  I LC+R K+   LP R K++I +  GTH TE  +NKQ+NDKER+ AALENP +  +V +C+
Sbjct:    8 IDKIDVFDIIRHIKDPEFPKTLEELKVVNEDWITVIDNNDINDSDDINNNNNENYKGYCFIKILFQPTVPHCHLAPTIALCIREKIKEYLPKRSKIEIYIKKGTHQTEDEINKQINDKERIIAALENPEIFQLVKKCI 145          
The following BLAST results are available for this feature:
BLAST of CX291035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YIVG_SCHPO4.780e-3251.85UPF0195 protein C144.16 OS=Schizosaccharomyces pom... [more]
U195B_DROME3.099e-3152.89UPF0195 protein CG30152 OS=Drosophila melanogaster... [more]
YHS2_YEAST9.968e-3047.55UPF0195 protein YHR122W OS=Saccharomyces cerevisia... [more]
FA96A_DICDI9.330e-2844.20UPF0195 protein FAM96A OS=Dictyostelium discoideum... [more]

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Properties
Property NameValue
Genbank descriptionC03003B11SK OF2 Citrus clementina cDNA clone C03003B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291035 ID=CX291035; Name=CX291035; organism=Citrus clementina; type=EST; length=525bp
AAAAATCAGTGAAAATGGTTTCTGGGTTGATAAATGCACATCCTGTAGTG
TATGAAAAGAAAGAACGGCGGGCTCGAAGTGCTTCGTCTTGTGTTAACGA
TGAGTATGCAGCTGAACAAATTGACCAACAAGAAGTATTTGATCATGTTA
GAGATATAAAAGATCCCGAGCATCCATACTCATTGGAAGAACTTAAAGTT
ATAACAGAGGATGCAATTGAAGTGGATGATGAGCGTAGCTATGTCAGGGT
CACATTTACTCCTACAGTTGAGCACTGCAGTATGGCAACAGTTATAGGTC
TGTGCTTGCGGGTGAAACTTATGAGGAGCTTGCCTCCTCGTTTTAAGGTG
GATATAATGGTGGCACCTGGAACTCATGCAACTGAAGCTGCCGTTAATAA
ACAACTGAACGATAAAGAACGGGTAGCTGCAGCACTAGAAAATCCAAACC
TGGTGGATATGGTTGATGAGTGTTTGGCTCCAACGTTTTGATTGAACATA
CTTTCACTCGTGCAGTTAGAGGCAT
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