CX291036

Overview
NameCX291036
Unique NameCX291036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.209e-61
Identity = 108/168 (64.29%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  127 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GG W  A ATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+EIKCVNDPKWC PG  ++ VTATNFC          GGWCNPP+ HFDL+ PVF  IA+YRAG+VP++YRRV C + GGIRFTINGH YFNLVLITNV GAGD+   S+KG
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKG 198          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.191e-61
Identity = 106/168 (63.10%), Postives = 125/168 (74.40%), Query Frame = 1
Query:  127 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GG W NA ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+EIKC +DP+WC+PG  +I+VTATNFC          GGWCNPP++HFDL+ P+F  I  YRAG+VPV+YRRVPC + GGIRFT+NG  YFNLVL+TNV GAGD++ VS+KG
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKG 200          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 6.052e-60
Identity = 103/165 (62.42%), Postives = 121/165 (73.33%), Query Frame = 1
Query:  130 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            G W +A ATFY              YGNLYS GYGTNTAALST LFN+G +CGSCYE++C ND +WCLPG++ VTATN C          GGWCNPP+ HFD+++P F  I  YRAG+VPV+YRRVPC ++GGIRFTINGHSYFNLVL+TNV G GDV +VSIKG
Sbjct:   27 GSWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKG 191          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.348e-59
Identity = 102/170 (60.00%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  115 HANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            +++  GGW    ATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++C +DP+WC+PG+I+V+ATNFC          GGWCNPP +HFDL++P F  IAQYRAG+VPVA+RRVPC + GGIRFTING+ YF+LVLITNVGGAGD+ AVS+KG
Sbjct:   25 NSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKG 194          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.761e-59
Identity = 107/173 (61.85%), Postives = 126/173 (72.83%), Query Frame = 1
Query:  118 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            A GGG W +A ATFY              YGNLYSQGYG N AALSTALFN+G SCG+C+EIKCVN P  +WC PG+  I++TATNFC          GGWCNPP+ HFDL+ P+F HIA+YRAG+VPV+YRRVPC ++GG+RFTING  YFNLVLITNV GAGD+   S+KG
Sbjct:   30 AYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKG 202          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 6.692e-59
Identity = 103/168 (61.31%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  127 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GGGW  A ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +DPKWC  G+  I +TATNFC          GGWCNPP+ HFDL+ P+F  IA+YRAG+VPV++RRVPC +RGGIRFTING  YFNLVL+TNV GAG++  + +KG
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKG 195          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.740e-59
Identity = 109/173 (63.01%), Postives = 128/173 (73.99%), Query Frame = 1
Query:  115 HANGG--GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            H  GG  G WINA ATFY              YGNLYSQGYG  TAALSTALF+ GLSCG+C+E+ CVNDP+WC+ G +I+VTATNFC          GG C+PP  HFDLSQP+++ IA Y++G++PV YRRV C R GGIRFTINGHSYFNLVL+TNVGGAGDVH+VS+KG
Sbjct:   29 HHPGGHMGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKG 193          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.060e-56
Identity = 101/170 (59.41%), Postives = 124/170 (72.94%), Query Frame = 1
Query:  124 GGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKW-CLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            G G W    ATFY              YGNLYSQGYGT+TAALSTALFN GLSCGSCYE++C  D +  CLPG  T+ VTATNFC          GGWCNPP++HFDL++P F  IA++ AG+VPV++RRV C R+GG+RFT+NGH+YFNLVL+TNVGGAGDV ++++KG
Sbjct:   24 GLGQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKG 193          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.925e-56
Identity = 103/169 (60.95%), Postives = 118/169 (69.82%), Query Frame = 1
Query:  118 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            A G  GW +  ATFY              YGNLYS GYGT+TAALSTALFNNG SCG+C+E++C      CL GT+ VTATN C          GGWCNPP+ HFD+++P F  IAQ RAGVVPV YRRV C ++GGIRFTI GHSYFNLVL+TNVGGAGDV AVS+KG
Sbjct:   21 AGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKG 188          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.085e-52
Identity = 91/167 (54.49%), Postives = 115/167 (68.86%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GW+ A ATFY              YGNLY+QGYGT TAALSTALFN+GL+CG CY++ C    D  WC PG ++ +TATNFC          GGWCNPP+ HFD++QP ++ I  YR G++PV Y+RVPC ++GG+RFTINGH YF LVL+TNVG AG + A+ +KG
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKG 199          
The following BLAST results are available for this feature:
BLAST of CX291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP16_ARATH3.209e-6164.29Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA3_ARATH4.191e-6163.10Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA2_ORYSJ6.052e-6062.42Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ARATH1.348e-5960.00Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA7_ORYSJ1.761e-5961.85Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH6.692e-5961.31Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA5_ARATH8.740e-5963.01Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA6_ORYSJ4.060e-5659.41Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ6.925e-5660.95Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ2.085e-5254.49Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003C02SK OF2 Citrus clementina cDNA clone C03003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291036 ID=CX291036; Name=CX291036; organism=Citrus clementina; type=EST; length=626bp
TCGGCACGAGCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTT
CTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCAT
TGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGT
GCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTG
TGGCTATGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCT
TGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAG
ATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGT
CACAGCTACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAG
GCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTG
TTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAG
GAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGGTTCACAATCAATGGCC
ATTCCTACTTCAACCTAGTGTTGATCACCAACGTTGGTGGTGCTGGTGAT
GTTCATGCTGTTTCAATCAAAGGATC
back to top