CX291036

Overview
NameCX291036
Unique NameCX291036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.351e-51
Identity = 92/163 (56.44%), Postives = 113/163 (69.33%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W +ARATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY+I CV+DP+WCLPGTI +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 215          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.351e-51
Identity = 91/163 (55.83%), Postives = 113/163 (69.33%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W +ARATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY+I CVNDP+WCLPG++ +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 208          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.765e-51
Identity = 96/176 (54.55%), Postives = 120/176 (68.18%), Query Frame = 1
Query:  118 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN----DPKWCLPG----TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK 621
            A   G W +A ATFY              YGN Y QGYGT+TAALS  +F +GLSCG+C+E++C      D + CLP     +I+VTAT+ C          GGWCNPP  HFDLSQP F  IA++++G+VPV+YRRV C R+GG+RFTINGHSYFNLVL++NVGGAGDVHAV++K
Sbjct:   24 AAAAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVK 199          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 6.707e-51
Identity = 91/163 (55.83%), Postives = 112/163 (68.71%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +KG
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKG 212          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.144e-50
Identity = 97/165 (58.79%), Postives = 111/165 (67.27%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W  A ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ I C     +WC PGT I VTATNFC          GGWCNPP++HFD+SQP ++ IA YRAG+VPV YRRVPC R GGIRF +NGHSYF LVL+TNVGG+G V  + IKG
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKG 189          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.329e-50
Identity = 90/162 (55.56%), Postives = 111/162 (68.52%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK 621
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +K
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVK 217          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.347e-50
Identity = 89/166 (53.61%), Postives = 112/166 (67.47%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W+ A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ + G
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMG 217          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 7.416e-50
Identity = 92/164 (56.10%), Postives = 113/164 (68.90%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GW + RATFY              YG+L+ QGYG  TAALSTALFNNG  CG+CYEI C + P+WCLPG+I +TATNFC            WCNPPQ+HFDLSQP+F  IA+Y+AGVVPV +RRVPC + GG++F I G+ +F ++L  NVGGAG V A+ IKG
Sbjct:   89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKG 250          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 7.416e-50
Identity = 89/166 (53.61%), Postives = 110/166 (66.27%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W  A ATFY              YGNLYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YF LVL+TNV  AG + ++ + G
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMG 204          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 9.685e-50
Identity = 90/166 (54.22%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W+ A ATFY              Y +LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ VTATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I G
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 215          
The following BLAST results are available for this feature:
BLAST of CX291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP25_ARATH1.351e-5156.44Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH1.351e-5155.83Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP21_ORYSJ1.765e-5154.55Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH6.707e-5155.83Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXPA8_ORYSJ1.144e-5058.79Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP26_ARATH3.329e-5055.56Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ORYSJ4.347e-5053.61Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH7.416e-5056.10Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP23_ORYSJ7.416e-5053.61Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ9.685e-5054.22Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC03003C02SK OF2 Citrus clementina cDNA clone C03003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291036 ID=CX291036; Name=CX291036; organism=Citrus clementina; type=EST; length=626bp
TCGGCACGAGCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTT
CTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCAT
TGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGT
GCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTG
TGGCTATGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCT
TGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAG
ATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGT
CACAGCTACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAG
GCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTG
TTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAG
GAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGGTTCACAATCAATGGCC
ATTCCTACTTCAACCTAGTGTTGATCACCAACGTTGGTGGTGCTGGTGAT
GTTCATGCTGTTTCAATCAAAGGATC
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