CX291036

Overview
NameCX291036
Unique NameCX291036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291036_ssr11 microsatellite CX291036_ssr11:11..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1842 contig Ccv1_Contig1842:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.685e-50
Identity = 92/167 (55.09%), Postives = 113/167 (67.66%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GW+ A ATFY              YGNLY+ GY TNTAALSTALFN+G SCG CY+I C     P+WCL G +I +TATNFC          GGWCNPP+ HFD++QP F  IA+Y+AG+VP+ Y++V C R GG+RFTING +YF LVLI+NV G G++  V IKG
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKG 193          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.158e-49
Identity = 90/172 (52.33%), Postives = 111/172 (64.53%), Query Frame = 1
Query:  118 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            A    GW    ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C    DP+WC  G ++ VTATNFC          GGWCNPP+ HFD++QP ++ I  YR G+VPVA+RRVPC RRGG+RFT+ G  YF LVL+TNV  AG V ++ ++G
Sbjct:   28 AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRG 199          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.818e-49
Identity = 89/166 (53.61%), Postives = 110/166 (66.27%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W  A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I G
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 199          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.807e-49
Identity = 91/172 (52.91%), Postives = 112/172 (65.12%), Query Frame = 1
Query:  118 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            A   GGW++  ATFY              YGNLY+QGYG   AALSTALFN G SCG CY I C     P+WC  GT + +TATN C          GGWCNPP+ HFD+SQP ++ I  YRAG+VPV Y++V C R+GG+RFT++G +YF LVLITNV G+G V A+S+KG
Sbjct:   21 AAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKG 192          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.807e-49
Identity = 90/164 (54.88%), Postives = 113/164 (68.90%), Query Frame = 1
Query:  139 INARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            ++  ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG CY+I C  ++ KWC  GT + +TATN C          GGWCNPP+QHFD++QP ++ I  YR G+VPV ++RV C R+GG+RFTING+SYF LVLITNVGG G + +V IKG
Sbjct:   25 LSGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKG 188          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 5.314e-48
Identity = 89/167 (53.29%), Postives = 110/167 (65.87%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GW  A ATFY              YG+LYS GYGTNTAALST LFN+G SCG CY I C    D ++C+ GT + +TATN C          GGWCNPP+QHFD+++P +  I  Y  G+VPV Y+RVPC ++GG+RFTING  YF LVL++NVGG G + +VSIKG
Sbjct:   33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKG 199          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 9.065e-48
Identity = 90/166 (54.22%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLP-GTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            WI A ATFY              YGNLY QGYG   AALSTALFN+G +CG CY I C  D   +WC P G + VTATN C          GGWCNPP++HFD+SQP ++ I  YRAG+VPV YRRV C RRGG+RFT+ G  +F LVL+ NV G+G V AVS++G
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRG 192          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.019e-47
Identity = 85/167 (50.90%), Postives = 112/167 (67.07%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GW +  ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG CY+I C +  +P+WCL G T+ +T TN C          GGWCNPP+ HFD+++P +  I  Y+AG+VPV Y+RVPC ++GG+RFT+ G +YF LVLI+NV G+G + +V +KG
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKG 197          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 4.499e-47
Identity = 90/164 (54.88%), Postives = 110/164 (67.07%), Query Frame = 1
Query:  142 NARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            +A ATFY              YGNLY+ GYG   AALS+ALFN+G  CG+CY I C  +  KWC PG  +I +TATN C          GGWCNPP+QHFD+SQP +++IA Y+AG+VPV Y+RVPC R GGIRF I+GH YF LV +TNVGG+G V  +SIKG
Sbjct:   30 SAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKG 193          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.499e-47
Identity = 89/167 (53.29%), Postives = 110/167 (65.87%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            G  N  ATFY              YG+LYS GYGT TAALSTALFN+G SCG CY I C +  D +WCL G ++++TATNFC          GGWCNPP +HFD++QP ++ I  YR G+VPV ++RV C ++GG+RF ING  YF LV I NVGGAG + +VSIKG
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKG 191          
The following BLAST results are available for this feature:
BLAST of CX291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP17_ARATH9.685e-5055.09Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP29_ORYSJ2.158e-4952.33Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ2.818e-4953.61Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ4.807e-4952.91Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ4.807e-4954.88Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ5.314e-4853.29Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP27_ORYSJ9.065e-4854.22Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP15_ORYSJ2.019e-4750.90Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ4.499e-4754.88Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ARATH4.499e-4753.29Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC03003C02SK OF2 Citrus clementina cDNA clone C03003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291036 ID=CX291036; Name=CX291036; organism=Citrus clementina; type=EST; length=626bp
TCGGCACGAGCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTT
CTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCAT
TGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGT
GCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTG
TGGCTATGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCT
TGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAG
ATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGT
CACAGCTACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAG
GCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTG
TTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAG
GAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGGTTCACAATCAATGGCC
ATTCCTACTTCAACCTAGTGTTGATCACCAACGTTGGTGGTGCTGGTGAT
GTTCATGCTGTTTCAATCAAAGGATC
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