CX291036

Overview
NameCX291036
Unique NameCX291036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291036_ssr11 microsatellite CX291036_ssr11:11..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1842 contig Ccv1_Contig1842:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.218e-41
Identity = 84/164 (51.22%), Postives = 105/164 (64.02%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W +A+A++Y              +G+L   GYG  T  LSTALF  G +CG CYE+KCV+D K+CLPGT I+VTATNFC          GG CNPP  HF L    F+ IA ++AGV+P+ YRRV C R GG+RF + G S+F  VLI+NVGGAGDV +V IKG
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKG 195          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.079e-40
Identity = 82/168 (48.81%), Postives = 103/168 (61.31%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            GWI A AT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C    DPKWCL G  + VTATNFC           GWCN P+ HFD+S P F  IA+    G+VPV YRRV C RRGG+RFT+ G   FN+V+I+NVGG G V +V+++G
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRG 188          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.692e-39
Identity = 77/164 (46.95%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W  ARAT+Y              YG+L   GYG  T  LS  LF  G  CG+C+E++CV+D +WC+PGT I++TATNFC          GG CNPP +HF L    F+ IA ++AG +PV YRR+ C + G +RFT++G   F  VLITNV G+GD+ AV IKG
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKG 203          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.504e-38
Identity = 78/166 (46.99%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCV--NDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+           GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KG
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKG 177          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.474e-37
Identity = 79/164 (48.17%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            W +ARA +Y               YG+L   GYG  TAALSTALFN+G SCG+CYEI C  +P+ CL G+I +TAT+ C            WC  P +HFDLS P+F  IAQ +A +VPV YRRVPC + GG++F + G+     +L  NVGGAGD+ AVS KG
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKG 201          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.474e-37
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = 1
Query:  229 YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK 621
            Y T TAALST LF +G  CG CYE++CV  P WC PG+  +++T TN C          GGWCNPP+ HFD++ P F  +AQ  AG+VPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVK 216          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.025e-35
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 1
Query:  205 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            YG+L    +   +A LS  LFN G SCG+C E++CVN  +WCL G+  ++VTAT+FC          GGWCN P++H +LS   F  IA+ RA ++P+ YRRV CGRRGG+RF+++G S+F  VLI+NVG  G+V  V +KG
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKG 194          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.025e-35
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  205 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            YG+L    YG  TA +S ALF  G +CG CYE++CVN   WCL G  T++VTAT+FC          GGWCN P++HF++S+  F  +A+ +A +VPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KG
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKG 198          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.361e-27
Identity = 70/174 (40.23%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  115 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKG 624
            H N G    G W++  ATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K  +        T++VTATN                    +HFDL+ P F  IA+ + GVVPV+YR+V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG
Sbjct:   71 HVNHGRYKCGPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKG 228          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 52/173 (30.06%), Postives = 76/173 (43.93%), Query Frame = 1
Query:  133 GWINARATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSI 618
            GW    AT+Y              Y G++    + +  AA S +++ +G  CGSCY++KC  +P  C    + V  T+ C          GG C     HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  G GD+ AV +
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC---------PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDL 199          
The following BLAST results are available for this feature:
BLAST of CX291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP10_ORYSJ8.218e-4151.22Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.079e-4048.81Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP13_ARATH7.692e-3946.95Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP20_ORYSJ8.504e-3846.99Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH2.474e-3748.17Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP17_ORYSJ2.474e-3752.63Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH3.025e-3548.59Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP16_ORYSJ3.025e-3550.00Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.361e-2740.23Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ4.250e-1330.06Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC03003C02SK OF2 Citrus clementina cDNA clone C03003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291036 ID=CX291036; Name=CX291036; organism=Citrus clementina; type=EST; length=626bp
TCGGCACGAGCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTT
CTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCAT
TGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGT
GCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTG
TGGCTATGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCT
TGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAG
ATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGT
CACAGCTACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAG
GCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTG
TTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAG
GAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGGTTCACAATCAATGGCC
ATTCCTACTTCAACCTAGTGTTGATCACCAACGTTGGTGGTGCTGGTGAT
GTTCATGCTGTTTCAATCAAAGGATC
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