CX291036

Overview
NameCX291036
Unique NameCX291036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291036_ssr11 microsatellite CX291036_ssr11:11..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1842 contig Ccv1_Contig1842:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 53/174 (30.46%), Postives = 76/174 (43.68%), Query Frame = 1
Query:  127 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSI 618
            G GW +  AT+Y              Y +   Q  + +  AA   +LF NG  CGSCY+IKC  + + C    + V  T+ C          GG C     HFD+S   F  +A          AGV+ + Y+RVPC     + F ++  S  Y+  +L+    G GD+ AV I
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSC---------PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHI 205          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 53/178 (29.78%), Postives = 79/178 (44.38%), Query Frame = 1
Query:  124 GGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTI--NGHSYFNLVLITNVGGAGDVHAVSI 618
            GGGGW+NARAT+Y               G  N+    +   T+  +  LF +G  CGSCY+I+CV  P    LP T+++T  N+                    HFDLS   F  +A+         AG++ + +RRVPC   G  + F +    +  +  +L+    G GDV  V +
Sbjct:   88 GGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVSL--------------YHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDL 251          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 52/173 (30.06%), Postives = 77/173 (44.51%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYRRVPCGRRGGIRFT----INGHSYFNLVLITNVGGAGDVHAVSI 618
            W N  AT+Y              Y G ++   + +  AA S +++ +GL CGSCY++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A      Q R AGV+ + Y RVPC   GG++ T    +  +  +  VL+    G GD+  V +
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVEL 198          
BLAST of CX291036 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 50/173 (28.90%), Postives = 75/173 (43.35%), Query Frame = 1
Query:  136 WINARATFYXXXXXXXXXXXXXXYGNLYS-QGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRG-GIRFTINGHS--YFNLVLITNVGGAGDVHAVSIK 621
            W+ A AT+Y              YG L   +       A++  LF NG  CG+CY+++C+ D   C    + V  T+ C             C+    HFDLS  VF  +A           G++PV YRR  C  RG  I F +N  S  ++  +L+    G GD+ ++ I+
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCL-DKSICSRRAVTVIITDECPG-----------CSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIR 196          
The following BLAST results are available for this feature:
BLAST of CX291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXPB5_ORYSJ5.551e-1330.46Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB7_ORYSJ7.250e-1329.78Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB15_ORYSJ8.015e-1230.06Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH8.862e-1128.90Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC03003C02SK OF2 Citrus clementina cDNA clone C03003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291036 ID=CX291036; Name=CX291036; organism=Citrus clementina; type=EST; length=626bp
TCGGCACGAGCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTT
CTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCAT
TGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGT
GCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTG
TGGCTATGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCT
TGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAG
ATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGT
CACAGCTACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAG
GCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTG
TTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAG
GAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGGTTCACAATCAATGGCC
ATTCCTACTTCAACCTAGTGTTGATCACCAACGTTGGTGGTGCTGGTGAT
GTTCATGCTGTTTCAATCAAAGGATC
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