CX291037

Overview
NameCX291037
Unique NameCX291037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 84/182 (46.15%), Postives = 105/182 (57.69%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEP----AIFTGSEVRIIDDDIPLA 539
            LE E EN G HLNAYTSREQT YYA      V NA+ +LADIL NS+   + + RER VILR           V+FDHLHATA+Q  PLGRTILGP +NI+++T+E L  YI  +Y + RM+I+++G+             F  L     +A QL    P      F GSE+R  DDD P A
Sbjct:   84 LELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGSISHEELVKLAEKYFGHLE---PSAEQLSLGAPRGLKPRFVGSEIRARDDDSPTA 262          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 76/180 (42.22%), Postives = 111/180 (61.67%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQ--LVANEPAIFTGSEVRIIDDDIPLA 539
            LE+E+E+MG HLNAY++RE T YY K L KD+  A+++L DI+QN + + ++I +ERDVILR           V+F++LHATAFQ TPL + + GP++N++ +++  L  Y+ THY APRMV+AA+G                 L   P T ++  +    P  FTGSE+R  DD +P A
Sbjct:  109 LEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQ---KHLGGIPWTYAEDAVPTLTPCRFTGSEIRHRDDALPFA 285          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.441e-34
Identity = 74/178 (41.57%), Postives = 111/178 (62.36%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QN + + ++I +ERDVILR           V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y+  HY APRMV+AA+G              F+ +S        + +  P  FTGSE+R  DD +PLA
Sbjct:  109 LEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLSRHYKAPRMVLAAAGGVKHQQLLDLAQDHFSSVS-QVYEEDAVPSITPCRFTGSEIRHRDDALPLA 285          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.211e-34
Identity = 75/180 (41.67%), Postives = 112/180 (62.22%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSA--DPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            LE+E+E+MG HLNAY++RE T YY K L KD+  A+++LADI+QN + + ++I +ERDVIL+           V+F++LHATAFQ TPL +++ GP++N++ +++  L  Y+  HY APRMV+AA+G              F+ LS   D      L    P  FTGS++   +D +PLA
Sbjct:  109 LEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTL---SPCRFTGSQICHREDGLPLA 285          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.343e-34
Identity = 73/178 (41.01%), Postives = 111/178 (62.36%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QNS+ + ++I +ERDVILR           V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y++ +Y APRMV+AA+G               + +S        +    P  FTGSE+R  DD +PLA
Sbjct:  109 LEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRNYKAPRMVLAAAGGVEHQQLLDLAQKHLSSVSR-VYEEDAVPGLTPCRFTGSEIRHRDDALPLA 285          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.349e-32
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 389
            +E EIEN+G HLNAYTSRE T YYAK L +D+  A+DIL+DIL  S  D + I RERDVI+R           V+FDHLH   ++  PLGRTILGP +NIK+IT+  L++YI  +Y   RMV+A +GA
Sbjct:   88 IELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGA 215          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.911e-27
Identity = 63/130 (48.46%), Postives = 82/130 (63.08%), Query Frame = 3
Query:    3 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNI-KTITKEHLQNYIHTHYTAPRMVIAASGA 389
            D+E  +E MG HLNAYTSRE T YY K   KDV  A+DILADIL NS   +  +  ER  I++           V+ DHLH+ AF+ + LG +ILGP +NI K+ITK  + +++ THYT PRM +  SGA
Sbjct:   87 DIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQDLDAERQTIVQEKEDVEARIDEVLMDHLHSAAFEGSGLGLSILGPLENIQKSITKGMIDDFVKTHYTGPRMALVGSGA 216          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: Y338_RICFE (Uncharacterized zinc protease RF_0338 OS=Rickettsia felis GN=RF_0338 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.691e-23
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKL 440
            + EE + +GGH NAYT  E+T YYA+VL ++ + AL+ILADI+QNS F +  I +E  VIL+           +I++  +++ ++  PLG+ ILG ++ + + TKEH  ++I  HY A  + ++ +G             LF+ L
Sbjct:   67 IAEEFDEIGGHFNAYTGHEKTIYYARVLSENCDKALNILADIIQNSIFAEEEIAKEYQVILQEIAHSQDNPDDLIYEKFYSSVYKDQPLGKPILGASKTLSSFTKEHFLSFIDKHYNAGNLYLSVAGNVDHDKIVSSAERLFSSL 211          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: Y219_RICPR (Uncharacterized zinc protease RP219 OS=Rickettsia prowazekii GN=RP219 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 48/127 (37.80%), Postives = 78/127 (61.42%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 386
            + EE +++GG+ NAYT  E T YYA+VL ++ + AL+ILADI+QNS F    I +E  +I++           +I++  + T ++  PLG++ILG  + + T TKEH  N+I  HY A  + ++ +G
Sbjct:   67 IAEEFDSIGGYFNAYTGHENTVYYARVLSENCHKALNILADIIQNSIFADEEIAKEYQIIMQEIAHHHDNPDDLIYETFYNTVYKGQPLGKSILGTTKTLVTFTKEHFLNFIGKHYNAENLYLSIAG 193          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: Y293_RICCN (Uncharacterized zinc protease RC0293 OS=Rickettsia conorii GN=RC0293 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKL 440
            + E  + +GGH NAYT  E T YYA+VL ++ + AL+ILADI+QNS F    I +E  VI++           ++++  +   ++  PLG++ILG A+ + T TKEH  N+I  +Y A  + ++ +G             LF+ L
Sbjct:   67 IAEAFDAIGGHFNAYTGHENTVYYARVLSENCDKALNILADIIQNSIFSDEEIAKEYQVIMQEIAHHQDNPDDLVYEKFYNKVYREQPLGKSILGTAKTLATFTKEHFFNFIDKYYNAANLYLSIAGNIDHDKIVIIAEQLFSSL 211          
The following BLAST results are available for this feature:
BLAST of CX291037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
MPPB_SCHPO6.471e-3546.15Probable mitochondrial-processing peptidase subuni... [more]
QCR1_HUMAN8.451e-3542.22Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_RAT1.441e-3441.57Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN3.211e-3441.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_MOUSE9.343e-3441.01Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST1.349e-3253.91Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_EUGGR2.911e-2748.46Ubiquinol-cytochrome-c reductase complex core prot... [more]
Y338_RICFE9.691e-2335.17Uncharacterized zinc protease RF_0338 OS=Rickettsi... [more]
Y219_RICPR2.820e-2237.80Uncharacterized zinc protease RP219 OS=Rickettsia ... [more]
Y293_RICCN1.072e-2134.48Uncharacterized zinc protease RC0293 OS=Rickettsia... [more]

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Properties
Property NameValue
Genbank descriptionC03003C03SK OF2 Citrus clementina cDNA clone C03003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291037 ID=CX291037; Name=CX291037; organism=Citrus clementina; type=EST; length=544bp
GAGATTTGGAGGAGGAGATCGAGAATATGGGGGGGCATTTGAATGCTTAC
ACTAGCAGGGAACAGACGACCTATTATGCCAAGGTGTTGGATAAGGATGT
GAATAATGCTTTGGATATTTTGGCTGATATTTTGCAGAACTCGACGTTTG
ATCAAGCGAGGATCACCAGGGAACGGGATGTTATTTTGAGAGAAATGGAG
GAGGTTGAGGGGCAAACAGAGGAAGTCATTTTTGATCATTTGCATGCAAC
TGCATTCCAGTACACTCCTTTGGGGAGAACTATTCTCGGTCCTGCTCAGA
ATATCAAGACAATCACAAAAGAACATCTGCAGAACTATATTCACACTCAC
TATACTGCTCCCAGAATGGTGATTGCTGCTTCTGGAGCTGTGAAGCATGA
AGAAGTTGTTGAGCAAGTGAAGAAATTGTTCACAAAATTATCAGCGGATC
CAACCACCGCTTCTCAATTAGTTGCAAATGAACCAGCAATTTTCACTGGT
TCTGAGGTTAGAATAATTGATGACGATATTCCTTTGGCACAATT
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