CX291040

Overview
NameCX291040
Unique NameCX291040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1665 contig Ccv1_Contig1665:664..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.917e-47
Identity = 88/148 (59.46%), Postives = 118/148 (79.73%), Query Frame = -3
Query:  130 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEA 573
            LK ETE++GKL E+TM+ KFG   +N+HF+SFNTICDATQERQDAM+ +VE+ +DL++V+GG+NSSNT+HLQEIA +R IPSY IDS  R+   N IA+K + GE+  + +WLP G++ IG+TSGASTPDK VE+V+ K+F  K + A
Sbjct:  253 LKSETEQMGKLFEQTMLEKFGPTEINDHFMSFNTICDATQERQDAMFDLVEKDLDLMVVIGGFNSSNTTHLQEIAVERNIPSYHIDSGDRLLGNNVIAHKPLDGEITTQTHWLPAGKLKIGVTSGASTPDKVVEDVIAKIFAEKAQPA 400          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.868e-46
Identity = 86/149 (57.72%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  127 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 573
            LK ETE+IGKL E+TM++K+    +N+HF SFNTICDATQERQDAM ++VE  ++L++V+GG+NSSNT+ LQ+IA +R IPSY ID+ +RI  G+ I ++ ++G+L+  ENWLP+G+I +GITSGASTPDK VE+V++K+F +K   AL
Sbjct:  253 LKDETEQIGKLFERTMLQKYSPIELNQHFQSFNTICDATQERQDAMLELVEHNLNLMVVIGGFNSSNTTQLQQIAFERRIPSYHIDTVERIKSGDSIEHRQLNGQLITTENWLPDGEIVVGITSGASTPDKVVEDVIEKIFAVKATAAL 401          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.440e-46
Identity = 91/149 (61.07%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  127 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 573
            LK ETEEIGKL E TM++K+G  ++N HF+SFNTICDATQERQDAM  +V+EK+DL++V+GG+NSSNT+HLQEI+   GI SY IDS  RI   N I +K +  +L  KENWLP+G+I +G+TSGASTPD  VE+VL+K+F IK   A+
Sbjct:  253 LKSETEEIGKLFEHTMLKKYGPLDLNNHFMSFNTICDATQERQDAMLDLVKEKLDLMVVIGGFNSSNTTHLQEISIHHGIVSYHIDSAARIDLNNHIEHKPLGKDLEVKENWLPDGKIVVGVTSGASTPDIVVEQVLQKIFAIKSAVAM 401          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.100e-46
Identity = 84/145 (57.93%), Postives = 118/145 (81.38%), Query Frame = -3
Query:  142 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGE-LVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIK 573
            LKGETE IGKL E+TMMR++G  N+ +HF+S +TICDATQERQDAM+K+VEE +DL++V+GG+NSSNT+HLQEIA +RG+PS+ ID   R+     I ++ +H + LV  +NWLP G++T+G+T+GASTPD+ V EV+ ++FE+K
Sbjct:  247 LKGETERIGKLFERTMMRRYGPANLADHFMSHDTICDATQERQDAMFKLVEEPLDLLVVIGGYNSSNTTHLQEIAVERGLPSFHIDGADRLVSAQFIEHRDLHSKSLVRTKNWLPAGEVTVGVTAGASTPDRVVAEVIARIFELK 391          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.524e-45
Identity = 89/147 (60.54%), Postives = 114/147 (77.55%), Query Frame = -3
Query:  133 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREE 573
            LK ETE+IGKL E TM++K+G   +N+HF+SFNTICDATQERQDAM ++V+EK+DL++V+GG+NSSNT+HLQEI   +GI SY ID+  RI P N I +K +  +L  KENWLP G I +GITSGASTPD  VE V++K+F  K  E
Sbjct:  253 LKSETEQIGKLFEGTMLKKYGPAVINDHFMSFNTICDATQERQDAMLELVKEKLDLMVVIGGFNSSNTTHLQEIPIYQGITSYHIDNATRIKPNNCIEHKPLGKDLEIKENWLPEGSIVVGITSGASTPDIIVEAVIEKIFSAKELE 399          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.339e-44
Identity = 85/152 (55.92%), Postives = 121/152 (79.61%), Query Frame = -3
Query:  118 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 573
            LK ETE+IG+L E+T++R++G  ++N+HF++FNTICDATQERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGIPS  ID+ +RIGPGN + +K +  +L   E +LP G + IGITSGASTPD+ VE V+ ++ ++   EA Q+A
Sbjct:  253 LKSETEDIGRLFERTLLRRYGPTDLNDHFLAFNTICDATQERQDAMFSLVDEPLDLMVVIGGYNSSNTTHLQEIAVSRGIPSVHIDAPERIGPGNAVEHKPLGQDLERLEPFLPEGDLRIGITSGASTPDRVVEGVIDRLLQL--AEAGQIA 402          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PROM4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=ispH PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.749e-44
Identity = 85/149 (57.05%), Postives = 118/149 (79.19%), Query Frame = -3
Query:  130 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEA 573
            LK ETEEIG+L EKTM+RK+G   + EHF++FNTICDAT+ERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +K +  +L+ ++N+LP G I++GITSGASTPD+ VE V+ K+  +  E+A
Sbjct:  253 LKSETEEIGRLFEKTMLRKYGPAELTEHFLAFNTICDATEERQDAMFSLVDEPLDLLVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGDQENTITHKPLGDDLITEKNFLPEGNISVGITSGASTPDRVVEHVIHKLINLSEEKA 401          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.284e-44
Identity = 83/146 (56.85%), Postives = 116/146 (79.45%), Query Frame = -3
Query:  136 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKRE 573
            LK ETEEIG+L E+TM+ KFG   +NEHF++FNTICDATQERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA +RGI S+ ID+ +RI   N I +K +  EL+ +  +LP+G +T+GITSGASTPD+ VE V++++  +  E
Sbjct:  253 LKRETEEIGRLFERTMLSKFGPTQLNEHFLAFNTICDATQERQDAMFSLVDEPLDLMVVIGGYNSSNTTHLQEIAINRGIRSFHIDTPERISADNSIEHKPLGQELIRELEFLPSGTVTVGITSGASTPDRVVEHVIQRLISLSEE 398          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.679e-44
Identity = 83/143 (58.04%), Postives = 115/143 (80.42%), Query Frame = -3
Query:  145 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 573
            LK ETEEIG+L E+TM+ K+G  ++NEHF++FNTICDATQERQDAM+ +V+E VDL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RI   N I +K +  EL  +E +LP+G +T+GITSGASTPD+ VE V++++  +
Sbjct:  253 LKSETEEIGRLFERTMLSKYGPTDLNEHFLAFNTICDATQERQDAMFSLVDETVDLMVVIGGYNSSNTTHLQEIAVSRGIRSFHIDTPERIHTDNSIEHKPLGEELTVEELFLPSGPVTVGITSGASTPDRVVEHVIQRLIAL 395          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.934e-43
Identity = 81/143 (56.64%), Postives = 115/143 (80.42%), Query Frame = -3
Query:  145 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 573
            LK ETEEIG+L E+TM+RK+G   +N+HF+SFNTICDAT+ERQ AM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG  N I +K +  +L  + N+LP G +++GITSGASTPD+ VE V++K+ ++
Sbjct:  253 LKSETEEIGRLFERTMLRKYGPIELNKHFLSFNTICDATEERQQAMFSLVDEPLDLLVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGDNNSIQHKPLGEDLFIESNFLPAGSVSVGITSGASTPDRVVEHVIQKLIDL 395          
The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ISPH_SYNP24.917e-4759.464-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP71.868e-4657.724-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP72.440e-4661.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI7.100e-4657.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP83.524e-4560.544-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR31.339e-4455.924-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM41.749e-4457.054-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW2.284e-4456.854-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS38.679e-4458.044-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM1.934e-4356.644-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC03003C06SK OF2 Citrus clementina cDNA clone C03003C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bp
GATTAGATGGGCACTAATAAAAGACCCGACAGAGGGCTGTGTTTATAATT
TTACAATATCTAGTGATACAATCACATCGAAATTTATTGATAATGTGTAT
GTTTGGACCTCAGTTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTC
GAATACCTTTTTAAGGACCTCTTCAACAGCCTTATCTGGGGTGGAGGCAC
CGGATGTTATACCGATTGTGATCTGGCCGTTCGGCAGCCAATTTTCTTTC
TCCACCAGCTCACCATGCATCAATTTATATGCTATTTTGTTTCCGGGGCC
TATTCTCTTCTCACTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTG
CAATCTCTTGAAGGTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACC
AAGATAAGATCGACCTTTTCCTCAACCATCTTATACATTGCATCTTGTCG
CTCTTGTGTAGCATCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGA
CATTTTCAACCCCAAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCA
ATCTCTTCTGTTTCACCCTTGAGCA
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