CX291040

Overview
NameCX291040
Unique NameCX291040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1665 contig Ccv1_Contig1665:664..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_VIBVU (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio vulnificus GN=ispH PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ ++ ++ VD+++VVG  NSSN++ L+E+AE  G P+Y  D  + I P                  W  +G++ +G+T+GAS P++ V ++L ++ E+
Sbjct:  198 ICYATQNRQDAVRELAKD-VDVVVVVGSKNSSNSTRLKELAEKLGTPAYLTDCPQDIEP-----------------QWF-DGKVKVGVTAGASAPEELVNQILTRIKEL 287          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = -3
Query:  148 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFE 510
            V+N     ISFNTIC+AT ERQ  + K +  KVD ++V+GG  SSNT+ L EI +     +  +++   I                  EN L N    IG+T+GASTPD  +EE + K+ E
Sbjct:  179 VKNRAIEVISFNTICNATSERQK-IAKDLSNKVDFMVVIGGKQSSNTTKLYEICKSNCNETIHVENSGEI-----------------PENILKNKNCVIGVTAGASTPDWIIEEAISKMSE 281          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CHRSD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ispH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = -3
Query:  118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471
            IC ATQ RQDA+  +  E  DL+LVVG  NSSN++ L+E+AE  G P+Y ID+ ++I P                  WL +    IGIT+GAS P+  V+ V++++  +  E   +LA
Sbjct:  197 ICYATQNRQDAVRGLASES-DLVLVVGSPNSSNSNRLRELAERTGTPAYLIDTAEQIRP-----------------EWLTDVS-AIGITAGASAPEVLVQAVIERLQSLGAEAPDELA 295          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_NITEU (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nitrosomonas europaea GN=ispH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 42/116 (36.21%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  124 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQ 471
            IC ATQ RQDA+ K+V+   DL++VVG  NSSN++ L E+A +  + +Y +D  +++                 +E+WL N +  IGIT+GAS P+  V++VL+++ +I  +++ Q
Sbjct:  197 ICYATQNRQDAVKKLVK-LCDLVVVVGSPNSSNSNRLCEVARNENVEAYMVDQAEQL-----------------QESWLTNKR-CIGITAGASAPEILVQQVLERLEQIAAKQSNQ 293          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_ALISL (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Aliivibrio salmonicida (strain LFI1238) GN=ispH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471
            IC ATQ RQDA+  M  + VD+++VVG  NSSN++ L+E++E  G  SY ID  + +                 KE WL N Q  +G+T+GAS P++ V +++++V
Sbjct:  196 ICYATQNRQDAVRDMAGQ-VDVMIVVGSKNSSNSNRLRELSEKLGTTSYLIDCPEEL-----------------KEEWLTN-QAKVGVTAGASAPEELVNQIIEQV 282          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH2_BURMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 OS=Burkholderia mallei GN=ispH2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ K +  + D+++VVG  NSSN+S L+E+AE RG+ +Y +D+ ++I P                  W+  G+  IG+T+GAS P+   + V+ ++ E+
Sbjct:  208 ICYATQNRQDAV-KFMAPQCDVVIVVGSPNSSNSSRLREVAEKRGVAAYMVDAPEQIDPA-----------------WVA-GKRRIGVTAGASAPEVLAQAVIARLREL 297          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH1_BURPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Burkholderia pseudomallei GN=ispH1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ K +  + D+++VVG  NSSN+S L+E+AE RG+ +Y +D+ ++I P                  W+  G+  IG+T+GAS P+   + V+ ++ E+
Sbjct:  208 ICYATQNRQDAV-KFMAPQCDVVIVVGSPNSSNSSRLREVAEKRGVAAYMVDAPEQIDPA-----------------WVA-GKRRIGVTAGASAPEVLAQAVIARLREL 297          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_AZOSB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Azoarcus sp. (strain BH72) GN=ispH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471
            IC ATQ RQDA+ K +    D++ VVG  NSSN++ L+E+AE RG+P+Y +D+   I P                  W+  G+  IG+T+GAS P+  V EV++++
Sbjct:  196 ICYATQNRQDAV-KFMTPHADVVFVVGSKNSSNSNRLREVAELRGVPAYLVDNAAGIDPA-----------------WIV-GKRRIGVTAGASAPEVLVAEVIERL 282          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_THISH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  160 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLK 471
            IC ATQ RQDA+ ++  E  DL LVVG  NSSN++ L+EIAE  G+ +Y +D+  +I                 ++ WL  G+  +G+T+GAS P+  V+EV++
Sbjct:  197 ICYATQNRQDAVKQLASE-CDLFLVVGSPNSSNSNRLREIAEKLGVEAYLVDNAGQI-----------------EDRWL-EGKTRVGVTAGASAPELLVQEVVE 281          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PROMH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Proteus mirabilis (strain HI4320) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = -3
Query:  118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471
            IC AT  RQ+A  ++ E + D++ VVG  NSSN++ L E+A+  G PSY IDS + I                  E W+ +  I +G+T+GAS PD  V++VL ++     EE ++L+
Sbjct:  197 ICYATTNRQEAARELAE-RADVVFVVGSKNSSNSNRLAELAQRAGKPSYLIDSAEDI-----------------DEIWVSHANI-VGVTAGASAPDILVQQVLARLKAFGAEEVIELS 295          
The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ISPH_VIBVU2.305e-1235.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOAB3.011e-1238.024-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CHRSD3.011e-1238.984-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NITEU5.136e-1236.214-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ALISL5.136e-1238.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH2_BURMA5.136e-1236.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH1_BURPS5.136e-1236.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_AZOSB6.707e-1238.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THISH1.494e-1139.424-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMH1.494e-1136.444-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC03003C06SK OF2 Citrus clementina cDNA clone C03003C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bp
GATTAGATGGGCACTAATAAAAGACCCGACAGAGGGCTGTGTTTATAATT
TTACAATATCTAGTGATACAATCACATCGAAATTTATTGATAATGTGTAT
GTTTGGACCTCAGTTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTC
GAATACCTTTTTAAGGACCTCTTCAACAGCCTTATCTGGGGTGGAGGCAC
CGGATGTTATACCGATTGTGATCTGGCCGTTCGGCAGCCAATTTTCTTTC
TCCACCAGCTCACCATGCATCAATTTATATGCTATTTTGTTTCCGGGGCC
TATTCTCTTCTCACTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTG
CAATCTCTTGAAGGTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACC
AAGATAAGATCGACCTTTTCCTCAACCATCTTATACATTGCATCTTGTCG
CTCTTGTGTAGCATCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGA
CATTTTCAACCCCAAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCA
ATCTCTTCTGTTTCACCCTTGAGCA
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