CX291040

Overview
NameCX291040
Unique NameCX291040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1665 contig Ccv1_Contig1665:664..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_VIBFM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio fischeri (strain MJ11) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471
            IC ATQ RQDA+  M  + VD+++VVG  NSSN++ L+E++E  G  SY ID  + +                 KE WL + Q  +G+T+GAS P++ V +++++V
Sbjct:  196 ICYATQNRQDAVRDMASQ-VDVMIVVGSKNSSNSNRLRELSEKLGTTSYLIDCPEDL-----------------KEEWLTD-QAKVGVTAGASAPEELVNQIIEQV 282          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_TREDE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Treponema denticola GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  148 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFE 480
            FNTIC AT +RQ A+ K+  E VD +LV+GG NS+NT  L + A D   P++ I+    I P    +Y +                  IG+T+GASTPD  ++EV KK+ E
Sbjct:  198 FNTICPATSDRQAALKKLAYE-VDALLVIGGKNSANTKRLFQTAVDTKKPAWLIEDASEI-PKEIFSYSV------------------IGLTAGASTPDFIIDEVEKKLLE 288          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_RALSO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Ralstonia solanacearum GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 36/106 (33.96%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471
            IC ATQ RQDA+ K +  +V++++VVG  NSSN++ L+E+AE  G+P+Y +D+ +++ P                  WL  G+  +G+T+GAS P++  + ++ ++
Sbjct:  209 ICYATQNRQDAV-KFMAPQVEVVIVVGSPNSSNSNRLRELAEKLGVPAYMVDTPEQVRP-----------------EWLA-GKRRVGLTAGASAPEELAQSIVDRL 295          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_NITSB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nitratiruptor sp. (strain SB155-2) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 49/139 (35.25%), Postives = 74/139 (53.24%), Query Frame = -3
Query:  142 EEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIK 558
            EE  K+V   M  K  V         FNTIC+AT E QDA  ++  E  D+++++GG NSSNT  L +I ++    SY +++ K +                EKE W   G+   GIT+GASTP+  +EEV++ + +I+
Sbjct:  162 EEYQKIVNYLMEHKKEVR-------VFNTICNATFENQDAARELSRE-ADIMIIIGGKNSSNTKQLFKICKENCPDSYLVENAKEL----------------EKE-WF-EGKKVCGITAGASTPNWIIEEVIENIKKIQ 274          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_AZOSE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Azoarcus sp. (strain EbN1) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ K +  +VD++ VVG  NSSN++ L+E+AE  G+P+Y +D+ + I P                  WL + +  +G+T+GAS P+  V+ V++++ E+
Sbjct:  196 ICYATQNRQDAV-KFMAPRVDVVFVVGSRNSSNSNRLREVAELLGVPAYLVDNAEGIEP-----------------IWLEDKK-RVGVTAGASAPEVLVDAVVERLKEL 285          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH1_RHOPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Rhodopseudomonas palustris GN=ispH1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQ A+ +M  + VDLILVVG  NSSN++ L+EI  + GIPSY I     + P                  WL +G+  +GIT+GAS P+  V++V++ +  I
Sbjct:  191 ICYATQNRQSAVRQM-SKLVDLILVVGANNSSNSNRLREIGTEAGIPSYLIADGSELDPA-----------------WL-DGKKAVGITAGASAPEVLVDDVIEALRRI 280          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_VIBPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio parahaemolyticus GN=ispH PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ ++  + VD+++VVG  NSSN++ L+E+AE  G P Y  D  + I P                  W   G+  +G+T+GAS P++ V ++L+++ E+
Sbjct:  198 ICYATQNRQDAVRELAGD-VDVMVVVGSKNSSNSTRLKELAEKLGTPGYLTDCPEDIKP-----------------EWF-EGKTKVGVTAGASAPEELVNQILERIKEL 287          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_VIBF1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471
            IC ATQ RQDA+  M  + VD+++VVG  NSSN++ L+E++E  G  SY ID  + +                 KE WL   Q  +G+T+GAS P++ V +++++V
Sbjct:  196 ICYATQNRQDAVRDMASQ-VDVMIVVGSKNSSNSNRLRELSEKLGTTSYLIDCPEDL-----------------KEEWLTE-QTKVGVTAGASAPEELVNQIIEQV 282          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_HAHCH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Hahella chejuensis (strain KCTC 2396) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = -3
Query:  118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471
            IC ATQ RQDA+ K +    D++LVVG  NSSN++ L+E+AE    P+Y ID    I P                 +W   G  ++G+T+GAS P+  V++V++++ E+  E   ++A
Sbjct:  197 ICYATQNRQDAV-KELAATCDVVLVVGSVNSSNSNRLRELAERMQTPAYLIDGAHEIQP-----------------DWFA-GAASVGVTAGASAPEVLVQQVVQRLRELGGEAPAEIA 295          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_SODGM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Sodalis glossinidius (strain morsitans) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = -3
Query:  121 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 471
            IC AT  RQ+A+  +  +  D++LVVG  NSSN++ L E+A+  G P+Y IDS   I                 +E+WL  G  TIG+T+GAS PD  V++V++++  +  E A +L
Sbjct:  196 ICYATTNRQEAVRSLAAD-ADVVLVVGSKNSSNSNRLSELAQRVGKPAYLIDSAGDI-----------------QESWL-QGTQTIGVTAGASAPDILVQQVIERLRLLGAEGAKEL 293          
The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ISPH_VIBFM1.952e-1137.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TREDE1.952e-1139.644-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_RALSO1.952e-1133.964-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NITSB1.952e-1135.254-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_AZOSE1.952e-1136.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH1_RHOPA1.952e-1140.374-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_VIBPA2.549e-1135.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_VIBF12.549e-1137.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HAHCH2.549e-1135.594-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SODGM3.329e-1137.614-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC03003C06SK OF2 Citrus clementina cDNA clone C03003C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bp
GATTAGATGGGCACTAATAAAAGACCCGACAGAGGGCTGTGTTTATAATT
TTACAATATCTAGTGATACAATCACATCGAAATTTATTGATAATGTGTAT
GTTTGGACCTCAGTTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTC
GAATACCTTTTTAAGGACCTCTTCAACAGCCTTATCTGGGGTGGAGGCAC
CGGATGTTATACCGATTGTGATCTGGCCGTTCGGCAGCCAATTTTCTTTC
TCCACCAGCTCACCATGCATCAATTTATATGCTATTTTGTTTCCGGGGCC
TATTCTCTTCTCACTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTG
CAATCTCTTGAAGGTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACC
AAGATAAGATCGACCTTTTCCTCAACCATCTTATACATTGCATCTTGTCG
CTCTTGTGTAGCATCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGA
CATTTTCAACCCCAAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCA
ATCTCTTCTGTTTCACCCTTGAGCA
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