CX291040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PELPD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter propionicus (strain DSM 2379) GN=ispH PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -3 Query: 136 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKRE 480 FNTICDAT RQ+ K + +VD +LVVGG+NS+NT L E+ + ++ I++ I P W G T+G+T+GASTP ++EV+ ++ EI ++ Sbjct: 184 FNTICDATAVRQEEA-KELARQVDCMLVVGGFNSANTRRLAEVCAELQPRTHHIETAAEIDPA-----------------WF-EGVATVGVTAGASTPKWIIDEVMGRIGEINKK 279
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_METPP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Methylibium petroleiphilum (strain PM1) GN=ispH PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = -3 Query: 154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471 IC ATQ RQDA+ K++ +VD+++VVG SSN++ L+E+AE G P+Y +DS + P W G +G+T+GAS P+ V EV++++ Sbjct: 208 ICYATQNRQDAV-KVLAPQVDVVVVVGSPTSSNSNRLRELAERLGTPAYMVDSASDLRP-----------------EWF-EGSARVGLTAGASAPELLVREVIERL 294
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH2_BURPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 OS=Burkholderia pseudomallei GN=ispH2 PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = -3 Query: 163 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVL 471 IC ATQ RQ A+ ++ E+VD++LVVG NSSN++ L+EI + G+PSY + + + W N + T+G+T+GAS P++ VE+V+ Sbjct: 193 ICYATQNRQAAVREL-SEQVDVLLVVGATNSSNSNRLREIGTESGVPSYLVADGSEV-----------------RAEWFANAR-TVGLTAGASAPEEMVEDVI 276
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH1_BURMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Burkholderia mallei GN=ispH1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = -3 Query: 163 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVL 471 IC ATQ RQ A+ ++ E+VD++LVVG NSSN++ L+EI + G+PSY + + + W N + T+G+T+GAS P++ VE+V+ Sbjct: 193 ICYATQNRQAAVREL-SEQVDVLLVVGATNSSNSNRLREIGTESGVPSYLVADGSEV-----------------RAEWFANAR-TVGLTAGASAPEEMVEDVI 276
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_NAUPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=ispH PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 42/134 (31.34%), Postives = 77/134 (57.46%), Query Frame = -3 Query: 145 KLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 546 K+ + + + ++N E + FNTIC+AT E QDA+ ++ + K D+++++GG NSSNT L IA++ +Y ++SE+ + K+ W G+ GI++GASTP+ VE+++ ++ E+ Sbjct: 163 KINDYLKITNYLIQNYKEVRV-FNTICNATFENQDAVRELAK-KADIMIIIGGKNSSNTKQLYNIAKE-FCEAYLVESEEEL-----------------KKEWF-EGKKHCGISAGASTPEWLVEKIISRIKEL 275
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_MANSM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispH PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = -3 Query: 100 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA*TEVQT 477 N IC AT RQ A+ ++ E+ DL++VVG NSSN++ L E+A G+P+ ID I P +WL G TIG+T+GAS P+ V+ V+ ++ E+ + +L E T Sbjct: 194 NDICYATTNRQQAVRELAEQS-DLVIVVGSKNSSNSNRLAELASRMGVPAKLIDDSNDIEP-----------------DWL-KGINTIGVTAGASAPEVLVQSVIARLKELGVDSVEELEGCEENT 300
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CAMLR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=ispH PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = -3 Query: 148 TEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFE 561 T++I K +E V+ V FNTICDAT + Q+A+ ++ + K D++++VGG NS+NT L IA++ SY I++EK I ++ W +G+ G+++GASTPD ++ VL+K+ E Sbjct: 159 TKKIEKFMEIVNFLMLKVKEVRV----FNTICDATFKNQEAINELAK-KSDVMVIVGGKNSANTKQLFLIAKNYCEDSYLIENEKEI-----------------QKEWF-SGKEKCGVSAGASTPDWVIDLVLEKIKE 273
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CAMHC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ispH PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -3 Query: 154 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 480 FNTIC+AT + Q+A K+ + K D+++++GG NSSNT L I+++ SY I++E + K+ W N +I GIT+GASTP+ +++V+KK+ Sbjct: 182 FNTICNATFQNQEAAAKLAK-KADVMIIIGGKNSSNTKQLLLISQNFCKNSYLIENENEL-----------------KKEWFLNKEI-CGITAGASTPEWIIKKVVKKI 271
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_YERPY (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -3 Query: 118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471 IC AT RQ+A+ + + D++LVVG NSSN++ L E+ + G P+Y IDS I +E WL Q IG+T+GAS PD V++V+ ++ ++ E+++L+ Sbjct: 197 ICYATTNRQEAVRNLAND-ADIVLVVGSKNSSNSNRLAELVQRMGKPAYLIDSAADI-----------------QEFWLQGAQ-CIGVTAGASAPDILVQQVIARLKDLGAGESIELS 295
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_YERPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Yersinia pseudotuberculosis GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -3 Query: 118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471 IC AT RQ+A+ + + D++LVVG NSSN++ L E+ + G P+Y IDS I +E WL Q IG+T+GAS PD V++V+ ++ ++ E+++L+ Sbjct: 197 ICYATTNRQEAVRNLAND-ADIVLVVGSKNSSNSNRLAELVQRMGKPAYLIDSAADI-----------------QEFWLQGAQ-CIGVTAGASAPDILVQQVIARLKDLGAGESIELS 295 The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bpback to top |