CX291040

Overview
NameCX291040
Unique NameCX291040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1665 contig Ccv1_Contig1665:664..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PELPD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter propionicus (strain DSM 2379) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  136 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKRE 480
            FNTICDAT  RQ+   K +  +VD +LVVGG+NS+NT  L E+  +    ++ I++   I P                  W   G  T+G+T+GASTP   ++EV+ ++ EI ++
Sbjct:  184 FNTICDATAVRQEEA-KELARQVDCMLVVGGFNSANTRRLAEVCAELQPRTHHIETAAEIDPA-----------------WF-EGVATVGVTAGASTPKWIIDEVMGRIGEINKK 279          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_METPP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Methylibium petroleiphilum (strain PM1) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = -3
Query:  154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471
            IC ATQ RQDA+ K++  +VD+++VVG   SSN++ L+E+AE  G P+Y +DS   + P                  W   G   +G+T+GAS P+  V EV++++
Sbjct:  208 ICYATQNRQDAV-KVLAPQVDVVVVVGSPTSSNSNRLRELAERLGTPAYMVDSASDLRP-----------------EWF-EGSARVGLTAGASAPELLVREVIERL 294          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH2_BURPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 OS=Burkholderia pseudomallei GN=ispH2 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  163 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVL 471
            IC ATQ RQ A+ ++  E+VD++LVVG  NSSN++ L+EI  + G+PSY +     +                 +  W  N + T+G+T+GAS P++ VE+V+
Sbjct:  193 ICYATQNRQAAVREL-SEQVDVLLVVGATNSSNSNRLREIGTESGVPSYLVADGSEV-----------------RAEWFANAR-TVGLTAGASAPEEMVEDVI 276          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH1_BURMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Burkholderia mallei GN=ispH1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  163 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVL 471
            IC ATQ RQ A+ ++  E+VD++LVVG  NSSN++ L+EI  + G+PSY +     +                 +  W  N + T+G+T+GAS P++ VE+V+
Sbjct:  193 ICYATQNRQAAVREL-SEQVDVLLVVGATNSSNSNRLREIGTESGVPSYLVADGSEV-----------------RAEWFANAR-TVGLTAGASAPEEMVEDVI 276          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_NAUPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 42/134 (31.34%), Postives = 77/134 (57.46%), Query Frame = -3
Query:  145 KLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 546
            K+ +   +  + ++N  E  + FNTIC+AT E QDA+ ++ + K D+++++GG NSSNT  L  IA++    +Y ++SE+ +                 K+ W   G+   GI++GASTP+  VE+++ ++ E+
Sbjct:  163 KINDYLKITNYLIQNYKEVRV-FNTICNATFENQDAVRELAK-KADIMIIIGGKNSSNTKQLYNIAKE-FCEAYLVESEEEL-----------------KKEWF-EGKKHCGISAGASTPEWLVEKIISRIKEL 275          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_MANSM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  100 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA*TEVQT 477
            N IC AT  RQ A+ ++ E+  DL++VVG  NSSN++ L E+A   G+P+  ID    I P                 +WL  G  TIG+T+GAS P+  V+ V+ ++ E+  +   +L   E  T
Sbjct:  194 NDICYATTNRQQAVRELAEQS-DLVIVVGSKNSSNSNRLAELASRMGVPAKLIDDSNDIEP-----------------DWL-KGINTIGVTAGASAPEVLVQSVIARLKELGVDSVEELEGCEENT 300          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CAMLR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = -3
Query:  148 TEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFE 561
            T++I K +E        V+ V      FNTICDAT + Q+A+ ++ + K D++++VGG NS+NT  L  IA++    SY I++EK I                 ++ W  +G+   G+++GASTPD  ++ VL+K+ E
Sbjct:  159 TKKIEKFMEIVNFLMLKVKEVRV----FNTICDATFKNQEAINELAK-KSDVMVIVGGKNSANTKQLFLIAKNYCEDSYLIENEKEI-----------------QKEWF-SGKEKCGVSAGASTPDWVIDLVLEKIKE 273          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CAMHC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -3
Query:  154 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 480
            FNTIC+AT + Q+A  K+ + K D+++++GG NSSNT  L  I+++    SY I++E  +                 K+ W  N +I  GIT+GASTP+  +++V+KK+
Sbjct:  182 FNTICNATFQNQEAAAKLAK-KADVMIIIGGKNSSNTKQLLLISQNFCKNSYLIENENEL-----------------KKEWFLNKEI-CGITAGASTPEWIIKKVVKKI 271          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_YERPY (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -3
Query:  118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471
            IC AT  RQ+A+  +  +  D++LVVG  NSSN++ L E+ +  G P+Y IDS   I                 +E WL   Q  IG+T+GAS PD  V++V+ ++ ++   E+++L+
Sbjct:  197 ICYATTNRQEAVRNLAND-ADIVLVVGSKNSSNSNRLAELVQRMGKPAYLIDSAADI-----------------QEFWLQGAQ-CIGVTAGASAPDILVQQVIARLKDLGAGESIELS 295          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_YERPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Yersinia pseudotuberculosis GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -3
Query:  118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471
            IC AT  RQ+A+  +  +  D++LVVG  NSSN++ L E+ +  G P+Y IDS   I                 +E WL   Q  IG+T+GAS PD  V++V+ ++ ++   E+++L+
Sbjct:  197 ICYATTNRQEAVRNLAND-ADIVLVVGSKNSSNSNRLAELVQRMGKPAYLIDSAADI-----------------QEFWLQGAQ-CIGVTAGASAPDILVQQVIARLKDLGAGESIELS 295          
The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ISPH_PELPD3.329e-1135.654-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_METPP4.348e-1136.794-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH2_BURPS4.348e-1136.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH1_BURMA4.348e-1136.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NAUPA5.678e-1131.344-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MANSM5.678e-1134.924-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CAMLR5.678e-1134.064-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CAMHC5.678e-1136.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_YERPY7.416e-1134.754-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_YERPS7.416e-1134.754-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC03003C06SK OF2 Citrus clementina cDNA clone C03003C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bp
GATTAGATGGGCACTAATAAAAGACCCGACAGAGGGCTGTGTTTATAATT
TTACAATATCTAGTGATACAATCACATCGAAATTTATTGATAATGTGTAT
GTTTGGACCTCAGTTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTC
GAATACCTTTTTAAGGACCTCTTCAACAGCCTTATCTGGGGTGGAGGCAC
CGGATGTTATACCGATTGTGATCTGGCCGTTCGGCAGCCAATTTTCTTTC
TCCACCAGCTCACCATGCATCAATTTATATGCTATTTTGTTTCCGGGGCC
TATTCTCTTCTCACTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTG
CAATCTCTTGAAGGTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACC
AAGATAAGATCGACCTTTTCCTCAACCATCTTATACATTGCATCTTGTCG
CTCTTGTGTAGCATCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGA
CATTTTCAACCCCAAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCA
ATCTCTTCTGTTTCACCCTTGAGCA
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