CX291040

Overview
NameCX291040
Unique NameCX291040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1665 contig Ccv1_Contig1665:664..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_YERPB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -3
Query:  118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471
            IC AT  RQ+A+  +  +  D++LVVG  NSSN++ L E+ +  G P+Y IDS   I                 +E WL   Q  IG+T+GAS PD  V++V+ ++ ++   E+++L+
Sbjct:  197 ICYATTNRQEAVRNLAND-ADIVLVVGSKNSSNSNRLAELVQRMGKPAYLIDSAADI-----------------QEFWLQGAQ-CIGVTAGASAPDILVQQVIARLKDLGAGESIELS 295          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEHT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+  + + KVD++LVVG  NSSN++ L+E+A+  G  +Y ID    +                 +E+W   G   +G+T+GAS P+  V++V+ ++ E+
Sbjct:  196 ICYATQNRQDAVRDLAD-KVDVLLVVGAKNSSNSNRLRELADKMGTKAYLIDDATNV-----------------QESWF-TGINAVGVTAGASAPEVLVQQVITRLKEL 285          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEAE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = -3
Query:  121 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 477
            N IC ATQ RQDA+ K + ++ D++LVVG  NSSN++ L+E+AE  G P+Y ID  + +  G                 W  +G   IGIT+GAS P+  V  V+ ++ E    E  +L
Sbjct:  195 NDICYATQNRQDAV-KELADQCDMVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRG-----------------WF-DGVRRIGITAGASAPEVLVRGVIAQLREWGASEEQEL 294          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = -3
Query:  121 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 477
            N IC ATQ RQDA+ K + ++ D++LVVG  NSSN++ L+E+AE  G P+Y ID  + +  G                 W  +G   IGIT+GAS P+  V  V+ ++ E    E  +L
Sbjct:  195 NDICYATQNRQDAV-KELADQCDMVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRG-----------------WF-DGVRRIGITAGASAPEVLVRGVIAQLREWGASEEQEL 294          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEA8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = -3
Query:  121 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 477
            N IC ATQ RQDA+ K + ++ D++LVVG  NSSN++ L+E+AE  G P+Y ID  + +  G                 W  +G   IGIT+GAS P+  V  V+ ++ E    E  +L
Sbjct:  195 NDICYATQNRQDAV-KELADQCDMVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRG-----------------WF-DGVRRIGITAGASAPEVLVRGVIAQLREWGASEEQEL 294          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PASMU (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pasteurella multocida GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 46/120 (38.33%), Postives = 64/120 (53.33%), Query Frame = -3
Query:  124 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFE--IKREEALQ 477
            N IC AT  RQ A+ ++ ++  DL++VVG  NSSN++ L E+A   G+ S  ID    I P                  WL N   TIGIT+GAS P+  V+ V+K++ E  + R E LQ
Sbjct:  194 NDICYATTNRQQAVRELAQQS-DLVIVVGSKNSSNSNRLAELASRMGVVSKLIDDANDIDP-----------------TWLEN-VTTIGITAGASAPEVLVQSVVKRLQELGVTRVEELQ 294          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PARUW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Protochlamydia amoebophila (strain UWE25) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  145 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 477
            ++IC AT  RQ A+ + + +  DL+LVVG   SSN++ L+E A  RGI SY I+ EK I P                  WL   Q+ IG+T+GASTP++ V++ ++ + E+
Sbjct:  191 SSICYATTNRQMAL-REITDLTDLVLVVGDPQSSNSNRLREAASTRGIESYLINDEKEIHP-----------------EWLLGKQV-IGLTAGASTPEEIVQKCIQCLIEL 282          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_IDILO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Idiomarina loihiensis GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = -3
Query:   85 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA*TEVQTYTLSI 471
            IC ATQ RQDA+ ++  +  D++LVVG  NSSN++ L+E++E  G P+Y ID    I                  + WL  G   + +T+GAS P+  V+EV+ K+ E   + A++L+  E +  T SI
Sbjct:  196 ICYATQNRQDAVRELASD-ADVMLVVGARNSSNSNRLRELSEKMGTPAYLIDDASCI-----------------DKAWL-EGHEKVAVTAGASAPEVLVKEVIAKLQEWGGKTAVELSGRE-ENITFSI 304          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_COLP3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  160 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLK 471
            IC ATQ RQDA+ + + +KVDL+LVVG  NSSN++ L+E+A   G+ SY ID+ + I                 + +WL  G   +G+T+GAS P   +++V++
Sbjct:  196 ICYATQNRQDAV-REIADKVDLMLVVGAKNSSNSNRLKELASKMGVTSYLIDTAENI-----------------ETDWL-TGVNKVGVTAGASAPAVLIKQVVE 280          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_HAMD5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=ispH PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = -3
Query:  121 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 471
            IC AT  RQ A+ ++  EK D++LVVG  NSSN++ L E+A+  G P+Y IDS+  I                   +WL N +  IG+T+GAS PD  V++V+  +  +  +E++++
Sbjct:  197 ICYATTNRQQAVREL-SEKSDMVLVVGSKNSSNSNRLAELAKRMGKPAYLIDSDADI-----------------HADWLKNIKY-IGVTAGASAPDVLVQKVIITLQSLGADESIEM 294          
The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ISPH_YERPB7.416e-1134.754-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PSEHT7.416e-1135.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PSEAE7.416e-1137.824-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PSEAB7.416e-1137.824-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PSEA87.416e-1137.824-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PASMU7.416e-1138.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PARUW7.416e-1137.844-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_IDILO7.416e-1135.664-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_COLP37.416e-1138.464-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HAMD59.685e-1135.904-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC03003C06SK OF2 Citrus clementina cDNA clone C03003C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bp
GATTAGATGGGCACTAATAAAAGACCCGACAGAGGGCTGTGTTTATAATT
TTACAATATCTAGTGATACAATCACATCGAAATTTATTGATAATGTGTAT
GTTTGGACCTCAGTTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTC
GAATACCTTTTTAAGGACCTCTTCAACAGCCTTATCTGGGGTGGAGGCAC
CGGATGTTATACCGATTGTGATCTGGCCGTTCGGCAGCCAATTTTCTTTC
TCCACCAGCTCACCATGCATCAATTTATATGCTATTTTGTTTCCGGGGCC
TATTCTCTTCTCACTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTG
CAATCTCTTGAAGGTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACC
AAGATAAGATCGACCTTTTCCTCAACCATCTTATACATTGCATCTTGTCG
CTCTTGTGTAGCATCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGA
CATTTTCAACCCCAAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCA
ATCTCTTCTGTTTCACCCTTGAGCA
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