CX291040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_YERPB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -3 Query: 118 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA 471 IC AT RQ+A+ + + D++LVVG NSSN++ L E+ + G P+Y IDS I +E WL Q IG+T+GAS PD V++V+ ++ ++ E+++L+ Sbjct: 197 ICYATTNRQEAVRNLAND-ADIVLVVGSKNSSNSNRLAELVQRMGKPAYLIDSAADI-----------------QEFWLQGAQ-CIGVTAGASAPDILVQQVIARLKDLGAGESIELS 295
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEHT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = -3 Query: 145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471 IC ATQ RQDA+ + + KVD++LVVG NSSN++ L+E+A+ G +Y ID + +E+W G +G+T+GAS P+ V++V+ ++ E+ Sbjct: 196 ICYATQNRQDAVRDLAD-KVDVLLVVGAKNSSNSNRLRELADKMGTKAYLIDDATNV-----------------QESWF-TGINAVGVTAGASAPEVLVQQVITRLKEL 285
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEAE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = -3 Query: 121 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 477 N IC ATQ RQDA+ K + ++ D++LVVG NSSN++ L+E+AE G P+Y ID + + G W +G IGIT+GAS P+ V V+ ++ E E +L Sbjct: 195 NDICYATQNRQDAV-KELADQCDMVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRG-----------------WF-DGVRRIGITAGASAPEVLVRGVIAQLREWGASEEQEL 294
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = -3 Query: 121 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 477 N IC ATQ RQDA+ K + ++ D++LVVG NSSN++ L+E+AE G P+Y ID + + G W +G IGIT+GAS P+ V V+ ++ E E +L Sbjct: 195 NDICYATQNRQDAV-KELADQCDMVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRG-----------------WF-DGVRRIGITAGASAPEVLVRGVIAQLREWGASEEQEL 294
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSEA8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = -3 Query: 121 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 477 N IC ATQ RQDA+ K + ++ D++LVVG NSSN++ L+E+AE G P+Y ID + + G W +G IGIT+GAS P+ V V+ ++ E E +L Sbjct: 195 NDICYATQNRQDAV-KELADQCDMVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRG-----------------WF-DGVRRIGITAGASAPEVLVRGVIAQLREWGASEEQEL 294
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PASMU (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pasteurella multocida GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 46/120 (38.33%), Postives = 64/120 (53.33%), Query Frame = -3 Query: 124 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFE--IKREEALQ 477 N IC AT RQ A+ ++ ++ DL++VVG NSSN++ L E+A G+ S ID I P WL N TIGIT+GAS P+ V+ V+K++ E + R E LQ Sbjct: 194 NDICYATTNRQQAVRELAQQS-DLVIVVGSKNSSNSNRLAELASRMGVVSKLIDDANDIDP-----------------TWLEN-VTTIGITAGASAPEVLVQSVVKRLQELGVTRVEELQ 294
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PARUW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Protochlamydia amoebophila (strain UWE25) GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = -3 Query: 145 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 477 ++IC AT RQ A+ + + + DL+LVVG SSN++ L+E A RGI SY I+ EK I P WL Q+ IG+T+GASTP++ V++ ++ + E+ Sbjct: 191 SSICYATTNRQMAL-REITDLTDLVLVVGDPQSSNSNRLREAASTRGIESYLINDEKEIHP-----------------EWLLGKQV-IGLTAGASTPEEIVQKCIQCLIEL 282
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_IDILO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Idiomarina loihiensis GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = -3 Query: 85 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQLA*TEVQTYTLSI 471 IC ATQ RQDA+ ++ + D++LVVG NSSN++ L+E++E G P+Y ID I + WL G + +T+GAS P+ V+EV+ K+ E + A++L+ E + T SI Sbjct: 196 ICYATQNRQDAVRELASD-ADVMLVVGARNSSNSNRLRELSEKMGTPAYLIDDASCI-----------------DKAWL-EGHEKVAVTAGASAPEVLVKEVIAKLQEWGGKTAVELSGRE-ENITFSI 304
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_COLP3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=ispH PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -3 Query: 160 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLK 471 IC ATQ RQDA+ + + +KVDL+LVVG NSSN++ L+E+A G+ SY ID+ + I + +WL G +G+T+GAS P +++V++ Sbjct: 196 ICYATQNRQDAV-REIADKVDLMLVVGAKNSSNSNRLKELASKMGVTSYLIDTAENI-----------------ETDWL-TGVNKVGVTAGASAPAVLIKQVVE 280
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_HAMD5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=ispH PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11 Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = -3 Query: 121 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEALQL 471 IC AT RQ A+ ++ EK D++LVVG NSSN++ L E+A+ G P+Y IDS+ I +WL N + IG+T+GAS PD V++V+ + + +E++++ Sbjct: 197 ICYATTNRQQAVREL-SEKSDMVLVVGSKNSSNSNRLAELAKRMGKPAYLIDSDADI-----------------HADWLKNIKY-IGVTAGASAPDVLVQKVIITLQSLGADESIEM 294 The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bpback to top |