CX291041

Overview
NameCX291041
Unique NameCX291041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291041 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 3
Query:    6 KEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSEN--QTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTLVAFNMNTTRGIVVYDGAS-TANPI---MPALPAYNDTPTAYTFYSNITGLS--GGPQWVPCPRRVDERM 608
            K+VPI++GEWW  D++++ +R  + G       + TING+ GDL  CS    +++ L V++G++YLLR+IN AL ++ +FK+A H FTVV  D  Y  PY TD+V +APG+  DVL+  D P                 L    + T+RG++ Y GA+  +N +   MP +P  ++T  +Y F  N+TGL+     Q    P  VDER+
Sbjct:  162 KDVPIIIGEWWELDLIEL-DRRMLDGNFDDNPLSATINGKLGDLSNCSSTVEESFVLDVKRGESYLLRVINTALFSEYYFKVAGHTFTVVGADGNYLTPYKTDMVTVAPGEAIDVLMFTDAPPAYYHMVALANQPPPPDLQIPQL-TSRGLIRYAGAAMDSNNLPMPMPVMPDQHNTMPSYYFRRNLTGLALPEQQQRHRVPAHVDERL 368          
BLAST of CX291041 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSJ (Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.998e-28
Identity = 76/207 (36.71%), Postives = 112/207 (54.11%), Query Frame = 3
Query:    6 KEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSE--NQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTLVAFNMNTTRGIVVYDGASTAN---PI-MPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERM 608
            K+VPI++GEWW  D++++  R            A TING+ GDL  CS    +++ L V+ G++YLLR+IN A  ++ +FK+A H FTVV  D  Y  P+ TD+V +APG+  DVL+ AD P                         +RG+V Y G    N   P+ MP +P  ++T  +Y F++N+TGL   P+    P  VDER+
Sbjct:  156 KDVPIIIGEWWELDLVELDRRMRDGNFDDNPLSA-TINGKLGDLSNCSGIVEESFVLNVKHGESYLLRVINTAFFSEYYFKVAGHTFTVVGADGNYLTPFKTDMVTVAPGEAIDVLMVADAPPAHYHMIALANQPPEPD-PQIPKYISRGLVRYTGVDANNNGLPVPMPIMPNQHNTMPSYYFHANLTGLM-HPKHRRVPMHVDERI 359          
BLAST of CX291041 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.452e-28
Identity = 76/207 (36.71%), Postives = 112/207 (54.11%), Query Frame = 3
Query:    6 KEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSE--NQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTLVAFNMNTTRGIVVYDGASTAN---PI-MPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERM 608
            K+VPI++GEWW  D++++  R            A TING+ GDL  CS    +++ L V+ G++YLLR+IN A  ++ +FK+A H FTVV  D  Y  P+ TD+V +APG+  DVL+ AD P                         +RG+V Y  A   N   P+ MP +P  ++T  +Y F++N+TGL   P+    P  VDER+
Sbjct:  156 KDVPIIIGEWWELDLVELDRRMRDGNFDDNPLSA-TINGKLGDLSNCSGIVEESFVLNVKHGESYLLRVINTAFFSEYYFKVAGHTFTVVGADGNYLTPFKTDMVTVAPGEAIDVLMVADAPPAHYHMIVLANQPPEPD-PQIPEYISRGLVRYTSADANNNGLPVPMPIMPNQHNTMPSYYFHANLTGLM-HPKHRRVPMHVDERI 359          
BLAST of CX291041 vs. ExPASy Swiss-Prot
Match: LAC16_ORYSJ (Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 71/202 (35.15%), Postives = 95/202 (47.03%), Query Frame = 3
Query:    3 DKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGRPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGS---XXXXXXXXXXXXXTLVAFNMNTTRGIVVYDGASTANPIMP-----ALPAYNDTPTAYTFYSNITGLSGGPQWVPC 584
            DKE+PI+L EWWNDD+ +V +  + TG               GD               +G TYLLR+IN  L N +FF +A H  TVV++DA YT P   D ++IAPGQT DVLL+A++ +GS                  + FN +T   IV Y  + TA P  P      LPA  D   A  F      +     ++PC
Sbjct:   97 DKEIPIILSEWWNDDVENVLDEAKRTG---------------GD---------------QGNTYLLRVINTGLTNDMFFAVAGHCLTVVSIDARYTKPLTVDYIMIAPGQTMDVLLEANRTLGSNSRYYMAARAFITLPVDTIPFNNSTATAIVEYTDSPTARPPGPPEFPLLLPAIKDEDAAMAFVDERMLIDIDVNFLPC 268          
BLAST of CX291041 vs. ExPASy Swiss-Prot
Match: LAC3_THACU (Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 3
Query:    3 DKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGR---PGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQ 362
            D++  +++G+W++     +   G IT   P   D+ TING+     D  P + N  Y LKV++GK Y LR+IN++        I  HK TV+A D   T PY  D   I  GQ  D +++A+Q
Sbjct:  159 DEKTVLIIGDWYHTSSKAILATGNITLQQP---DSATINGKGRFDPDNTPANPNTLYTLKVKRGKRYRLRVINSSAIASFRMSIQGHKMTVIAADGVSTKPYQVDSFDILAGQRIDAVVEANQ 278          
BLAST of CX291041 vs. ExPASy Swiss-Prot
Match: LAC1_THACU (Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 3
Query:    3 DKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGR---PGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQ 362
            D++  +++G+W+++    +   G IT   P  +   TING+     D  P + +  Y LKV++GK Y LR+IN++      F +  HK TV+A D   T PY  D   I  GQ  D +++A+Q
Sbjct:  159 DEKTVLIIGDWYHESSKAILASGNITRQRPVSA---TINGKGRFDPDNTPANPDTLYTLKVKRGKRYRLRVINSSEIASFRFSVEGHKVTVIAADGVSTKPYQVDAFDILAGQRIDCVVEANQ 278          
The following BLAST results are available for this feature:
BLAST of CX291041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LAC18_ORYSJ6.869e-2937.32Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC20_ORYSJ1.998e-2836.71Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC20_ORYSI4.452e-2836.71Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
LAC16_ORYSJ7.859e-2535.15Putative laccase-16 OS=Oryza sativa subsp. japonic... [more]
LAC3_THACU4.046e-1334.96Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 ... [more]
LAC1_THACU2.008e-1233.33Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003C08SK OF2 Citrus clementina cDNA clone C03003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291041 ID=CX291041; Name=CX291041; organism=Citrus clementina; type=EST; length=609bp
CCGATAAAGAAGTTCCCATTGTTCTCGGAGAGTGGTGGAATGACGATATC
ATGGATGTTGCCAACCGAGGGGAAATTACCGGTGTAGGTCCTAGAATTTC
CGATGCTTTCACCATCAATGGAAGGCCTGGAGACCTCTATCCCTGCTCGG
AAAATCAAACATACAAGCTTAAGGTTGAGAAAGGGAAGACCTATCTCCTA
CGTATTATCAACGCTGCACTCAATAACCAGCTCTTCTTCAAGATAGCCAA
TCACAAATTTACAGTCGTCGCCGTTGACGCTGGGTACACTGATCCCTACG
TCACCGATGTGGTGGTGATAGCTCCCGGCCAAACCACTGACGTTCTGCTA
AAAGCCGACCAGCCAGTGGGTTCTTATTACATGGCTGCAAGAGCATACGC
TGCCCCGCCGCCGACGCTAGTAGCGTTCAATATGAACACCACGAGAGGCA
TCGTTGTCTACGATGGTGCCAGCACGGCCAATCCTATAATGCCAGCCTTA
CCAGCTTACAATGATACGCCTACAGCCTACACATTTTACAGTAATATAAC
TGGATTAAGTGGTGGACCTCAATGGGTCCCATGCCCACGTCGAGTGGATG
AACGTATGT
back to top