CX291077

Overview
NameCX291077
Unique NameCX291077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFIP_DROME (Cytoplasmic FMR1-interacting protein OS=Drosophila melanogaster GN=Sra-1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 53/184 (28.80%), Postives = 93/184 (50.54%), Query Frame = 1 
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLAS---VQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMG--------LQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H+LLSK L++D+F  ++ E   N+  ++   R+   ++ E+  DFL N+     T RFIR+ KV L+S   +Q+   P     +  G++ LN+A+ +    ++GF G PH  ++ RLLG + +  ++  +L  +      ++PLI G        L   +PKS  L   + G  G +   +  L
Sbjct:  828 HKLLSKYLALDNFDGMVKEANHNV--LAPYGRITLHVFVELNYDFLVNYCYNAATNRFIRT-KVNLSSSQAIQREKPPQMSHYYLWGSKQLNAAYSTQYGQYTGFVGSPHFHAMCRLLGYQGIAVVMDIILKDI------VKPLIQGSLLQFTKTLMIAMPKSCKLPRCEYGSPGVLSYYQAHL 1002
The following BLAST results are available for this feature:
BLAST of CX291077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CYFIP_DROME7.917e-1228.80Cytoplasmic FMR1-interacting protein OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionC03003G07SK OF2 Citrus clementina cDNA clone C03003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291077 ID=CX291077; Name=CX291077; organism=Citrus clementina; type=EST; length=546bp
CATGAATTGCTTTCCAAGGATCTTTCAATAGATTCATTCAGGCTCATCTT
GAATGAAATGCAAGAAAACATATCCCTGGTGTCATTTTCTAGTCGACTTG
CTTCTCAGATTTGGTCAGAGATGCAAAGCGATTTCTTGCCGAATTTTATC
CTTTGTAATACTACTCAGCGTTTCATCCGATCATCAAAAGTTCCTCTTGC
TTCTGTTCAAAAGCCTTCTGTTCCCTATGCCAAGCCTAGTTTCTACTGCG
GTACTCAAGATTTGAACTCTGCACATCAAAGCTTTGCACGTTTGCATAGT
GGATTCTTTGGAATACCCCACATGTTTTCTATTGTTCGGCTTCTTGGATC
CAGATCATTGCCTTGGCTTATCCGAGCACTACTAGATCATATGTCAAATA
AGATAACAACACTGGAACCGTTGATTATGGGGTTGCAAGAAACCTTGCCA
AAGTCTATTGGTCTACTGCATTTTGATAGTGGTGTAACAGGTTGTATGAG
GCTTGTTAAAGAACAACTTAATTGGGGAACAAAGTCTGAGCTCAAA
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