CX291203

Overview
NameCX291203
Unique NameCX291203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length310
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSM 309
            HDC VQ CDAS+LLD T    SEK    + G  R F  IE+ K  VE+ CPGVVSCADIL ++ RD   A+GGP   +K GRRD   +   + E  LP   D +
Sbjct:   69 HDCFVQGCDASILLDETPSIESEKTALPNLGSARGFGIIEDAKREVEKICPGVVSCADILTVAARDASAAVGGPSWTVKLGRRDSTTASKTLAETDLPGPFDPL 172          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER11_ARATH (Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSM 309
            HDC VQ CD S+LLD T     EK+   +   ++ ++ ++ IK  +E ECPGVVSCAD+L +  RD  + +GGPY  +  GR+D + +  E+    LP   + +
Sbjct:   70 HDCFVQGCDGSVLLDETETLQGEKKASPNINSLKGYKIVDRIKNIIESECPGVVSCADLLTIGARDATILVGGPYWDVPVGRKDSKTASYELATTNLPTPEEGL 173          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.683e-18
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 267
            HDC VQ CD S+L+   R   +E+    +  +  F  IE++K  +E  CPG VSCADILVL+ RD V ALGGP +P+ TGRRDGR S A
Sbjct:   71 HDCFVQGCDGSVLI---RGNGTERSDPGNASLGGFAVIESVKNILEIFCPGTVSCADILVLAARDAVEALGGPVVPIPTGRRDGRVSMA 156          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLS-EKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSR-AEILEQYLP 291
            HDC V+ CD S+L+++T      EK    +  +R F +I+ +K A+E +CPG+VSCADI+ L+ RD +VA+GGP   + TGRRDGR S  AE +    P
Sbjct:   65 HDCFVRGCDGSILINATSSNQQVEKLAPPNLTVRGFDFIDKVKSALESKCPGIVSCADIITLATRDSIVAIGGPTWNVPTGRRDGRISNFAEAMNNIPP 163          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.282e-18
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 267
            HDC V+ CD S+L++ST    +E++   +  +R F +I+ IK  +E +CPG+VSCADI+ L+ RD VV  GGP   + TGRRDGR S A
Sbjct:   66 HDCFVRGCDGSVLINSTSGN-AERDATPNLTVRGFGFIDAIKSVLEAQCPGIVSCADIIALASRDAVVFTGGPNWSVPTGRRDGRISNA 153          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER17_ARATH (Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.400e-17
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEK-EMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLP 291
            HDC V  CDASLLLD T   L EK  +     +R+F  +++IKEA+E+ CP  VSCADI++++ RD V   GGP   +K GR+D   +  +  +  +P
Sbjct:   63 HDCFVNGCDASLLLDDTPNMLGEKLSLSNIDSLRSFEVVDDIKEALEKACPATVSCADIVIMAARDAVALTGGPDWEVKLGRKDSLTASQQDSDDIMP 160          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 306
            HDC V+ CDAS+LLDS+   +SEK  + +    R F  IE IK A+E+ECP  VSCADIL L+ RD  V  GGP   +  GRRD R +        +P  N++
Sbjct:   73 HDCFVKGCDASILLDSSGTIISEKRSNPNRNSARGFELIEEIKHALEQECPETVSCADILALAARDSTVITGGPSWEVPLGRRDARGASLSGSNNDIPAPNNT 175          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLP 291
            HDC VQ CD S+LL+ T     E+  + + G +R F  ++NIK  VE  CPGVVSCADIL ++ RD VVALGGP   +  GRRD   +   +    LP
Sbjct:   67 HDCFVQGCDGSVLLNDTATFTGEQTANPNVGSIRGFGVVDNIKAQVEAVCPGVVSCADILAVAARDSVVALGGPSWRVLLGRRDSTTASLALANSDLP 164          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDG 252
            HDC V+ C+ S+LL+   K   EK    +  +R F  I+N+K A+E+ECPG+VSC+D+L L  RD +VAL GP   ++TGRRDG
Sbjct:   72 HDCFVRGCEGSVLLELKNKK-DEKNSIPNLTLRGFEIIDNVKAALEKECPGIVSCSDVLALVARDAMVALNGPSWEVETGRRDG 154          
BLAST of CX291203 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 HDCAVQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLP 291
            HDC V  CD S+LLD T     E+    +    R F  I +IK AVE+ CPGVVSCADIL ++ RD VV LGGP   +K GRRD + +        +P
Sbjct:   42 HDCFVNGCDGSILLDDTSSFTGEQNAGPNRNSARGFTVINDIKSAVEKACPGVVSCADILAIAARDSVVQLGGPNWNVKVGRRDAKTASQAAANSNIP 139          
The following BLAST results are available for this feature:
BLAST of CX291203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
PERX_NICSY2.159e-1848.08Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER11_ARATH2.159e-1838.46Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=... [more]
PER18_ARATH3.683e-1851.69Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER39_ARATH4.810e-1845.45Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=... [more]
PER3_ARATH6.282e-1848.31Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER17_ARATH1.400e-1742.86Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=... [more]
PER72_ARATH1.828e-1745.63Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER70_MAIZE1.828e-1746.94Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER56_ARATH1.828e-1748.81Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=... [more]
PERP7_BRARA2.387e-1745.92Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03005C08SK OF2 Citrus clementina cDNA clone C03005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291203 ID=CX291203; Name=CX291203; organism=Citrus clementina; type=EST; length=310bp
CATGACTGTGCTGTCCAGTCTTGTGATGCTTCACTGCTTCTGGACTCGAC
AAGAAAGACCTTGTCTGAGAAGGAGATGGACAGGAGCTTTGGTATGAGGA
ACTTCAGGTACATTGAGAACATCAAAGAAGCTGTTGAAAGAGAGTGCCCT
GGTGTTGTTTCCTGTGCTGATATCCTTGTCCTGTCCGGTAGAGATGGCGT
TGTTGCGCTTGGAGGCCCTTACATTCCTCTCAAGACAGGAAGAAGAGATG
GTAGAAAAAGCAGAGCAGAGATACTTGAGCAGTATCTCCCAGATCACAAT
GACAGCATGT
back to top