CX291205

Overview
NameCX291205
Unique NameCX291205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length363
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGADA+LVSSD A + AA  ++DYIIDTV   H L P                  +PL      ++  R+ + GS IG M ET+E+L+FC    + + IE+V+MD +N A+ERL ++DV+
Sbjct:  224 LGADAYLVSSDAAAMAAAGDSLDYIIDTVPVHHPLEPYLALLKLDGKLILMGVINQPLSFISPMVMLGRKAITGSFIGSMAETEEVLNFCVDKGLTSQIEVVKMDYVNQALERLERNDVR 343          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGAD ++VSSDPA+++    ++DYIIDTV   H L P                   PL+     ++  R+++ GS IG +KET+E+L FC +  + + IE V++D++N A ERL K+DV+
Sbjct:  225 LGADDYVVSSDPAEMQRLADSLDYIIDTVPVFHPLDPYLACLKLDGKLILMGVINTPLQFVTPLVILGRKVISGSFIGSIKETEEVLAFCKEKGLTSTIETVKIDELNIAFERLRKNDVR 344          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.329e-18
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGAD +LVSSD A++ AAM ++DYIIDTV   H L P                  +PL      ++  R+ + GS IG ++ET+E+L FC    + + IE+V+MD +N A+ERL ++DV+
Sbjct:  225 LGADDYLVSSDEAQMAAAMDSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIGEPLSFVSPMVMLGRKTITGSFIGSIEETEEVLRFCVDKGLTSQIEVVKMDYLNQALERLERNDVR 344          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGA+ +  +SDPA   A  G  D I++TVSA   +                  P KP    +F+L+  RR + GS +GG++ETQEMLDF A+H I   IE++  DQ++ A ER+ +SDV+
Sbjct:  220 LGANHYFATSDPATFTALAGRFDVILNTVSANLDVDAYLSMLRIDGTLVSVGAPAKPDTYSVFSLIMGRRSIAGSLVGGIQETQEMLDFAAEHGIEPKIEVIGADQVDEAYERILRSDVR 339          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGADA+LVSSD A + AA  ++DYIIDTV   H L P                  +PL      ++  R+ + GS IG + ET E+L FC    + + IE+V+M  +N A+ERL ++DV+
Sbjct:  224 LGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKLVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVR 343          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGADA+LVSSD A + AA  ++DYIIDTV   H L P                  +PL      ++  R+ + GS IG + ET E+L FC    + + IE+V+M  +N A++RL ++DV+
Sbjct:  224 LGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKHVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALDRLERNDVR 343          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGAD +LVSSD   ++ A  ++DYIIDTV   H L P                   PL+     ++  R+ + GS +G +KET+EML+F  +  + + IE+V MD IN A ERL K+DV+
Sbjct:  225 LGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVR 344          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGA+ F++SSD  ++KA   ++D+++DT S  H+  P                P + +K+    L    R++ GS  GG K TQ+MLDFCA H I  +IE++ + +IN A+ER+ K D+K
Sbjct:  225 LGAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSE-IKISPANLNLGMRMLAGSVTGGTKITQQMLDFCAAHKIYPNIEVIPIQKINEALERVVKKDIK 343          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGAD F++SSD  ++++   ++ +IIDT S  H   P                P + +KV    L  A R + GS  GG K+ QEM++FCA +N+  DIE++++D +N A++RL   DV+
Sbjct:  224 LGADNFVISSDENQMESLKSSLHFIIDTASGDHQFDPYLSLLKVGGVMVLLSFPSE-IKVHPENLNLAARSLAGSVTGGTKDIQEMINFCAANNVYPDIEMIKIDYVNEALQRLINRDVR 342          
BLAST of CX291205 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.489e-14
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    2 LGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLKVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVK 361
            LGAD F+VSSD  +++    ++++IIDT S  H   P                P +    P    +G R L  GS  GG K+ QEM++FCA + I  DIE++++D IN A++RL   DV+
Sbjct:  224 LGADNFVVSSDENQMETLKSSLNFIIDTASGDHPFDPYLTLLKVGGVMALLSFPSEIKVHPANLNLGGRSL-SGSVTGGTKDIQEMINFCAANKIYPDIEMIKIDYINEALQRLVDRDVR 342          
The following BLAST results are available for this feature:
BLAST of CX291205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CADH2_ORYSJ3.710e-1840.83Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
CADH4_ARATH4.846e-1838.33Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH_LOLPR6.329e-1840.00Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
ADHA_BACSU1.080e-1739.17Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
CADH_MAIZE1.559e-1639.17Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH_SACOF3.473e-1638.33Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH_MEDSA5.924e-1639.17Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH1_ARATH1.010e-1536.67Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH4_ORYSJ8.554e-1535.83Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH1_ORYSJ2.489e-1436.67Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC03005C10SK OF2 Citrus clementina cDNA clone C03005C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291205 ID=CX291205; Name=CX291205; organism=Citrus clementina; type=EST; length=363bp
ACTTGGTGCTGATGCATTCCTTGTTTCCAGTGATCCTGCTAAAGTTAAGG
CTGCTATGGGCACTATGGATTACATTATTGACACTGTGTCAGCGGTTCAT
TCCCTTGCACCACTACTTGGTCTGCTGAAAGTGAATGGAAAGCTGGTCAC
CGTGGGCTTGCCTGAGAAGCCCCTAAAGGTGCCTATTTTTGCTTTAGTTG
GGGCTCGGAGGCTTGTTGGAGGAAGCAACATTGGAGGAATGAAGGAGACA
CAAGAGATGTTGGACTTTTGCGCCAAGCACAACATTGCTGCAGACATTGA
ACTGGTCCGGATGGACCAAATTAACACAGCCATAGAAAGGCTTGCAAAGT
CTGATGTCAAGTA
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