CX291227

Overview
NameCX291227
Unique NameCX291227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_HELVI (60S ribosomal protein L31 OS=Heliothis virescens GN=RpL31 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.394e-29
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 2 
Query:    8 REKMVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIE 367
            + K   K K    EVVTRE+T+NLHKRLHG  FKK+AP+AIKEIRKFAEK MGT DVRVD +LNK +WS+G+R+VP           NDDED+  +L++LVT   +P   ++GL T+ ++
Sbjct:    3 KPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_PAROL (60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.684e-28
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 2 
Query:   14 KMVEKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            K  EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+AIKEIRKFA K MGT DVR+D +LNK +WS+G+R+VP           N+DED+  +LY+LVT   +P    +GL T  +++
Sbjct:    5 KKGEKKKGRSAINEVVTREYTINVHKRIHGVGFKKRAPRAIKEIRKFAVKEMGTPDVRIDTRLNKAVWSKGVRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTCKGLQTVNVDE 123
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_ICTPU (60S ribosomal protein L31 OS=Ictalurus punctatus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.200e-28
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG +FKK+AP+AIKEIRKFA K MGT DVR+D +LNK +W++G+R+VP           N+DED+  +LY+LVT   +P    +GL T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINVHKRIHGISFKKRAPRAIKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTYKGLQTVNVDE 124
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_RAT (60S ribosomal protein L31 OS=Rattus norvegicus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.862e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_PIG (60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.862e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_MOUSE (60S ribosomal protein L31 OS=Mus musculus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.862e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_MARMO (60S ribosomal protein L31 OS=Marmota monax GN=RPL31 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.862e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_HUMAN (60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.862e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_BOVIN (60S ribosomal protein L31 OS=Bos taurus GN=RPL31 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.862e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124
[Close]
BLAST of CX291227 vs. ExPASy Swiss-Prot
Match: RL31_XENLA (60S ribosomal protein L31 OS=Xenopus laevis GN=rpl31 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.432e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   23 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 370
            EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K M T DVR+D +LNK +W++GIR+VP           N+DED+  +LY+LVT   +P    +GL T  +++
Sbjct:    9 EKKKGRSAINEVVTREYTINIHKRIHGIGFKKRAPRALKEIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTNYKGLQTVNVDE 124
The following BLAST results are available for this feature:
BLAST of CX291227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_HELVI3.394e-2953.3360S ribosomal protein L31 OS=Heliothis virescens G... [more]
RL31_PAROL1.684e-2852.8960S ribosomal protein L31 OS=Paralichthys olivaceu... [more]
RL31_ICTPU2.200e-2852.5460S ribosomal protein L31 OS=Ictalurus punctatus G... [more]
RL31_RAT1.862e-2751.6960S ribosomal protein L31 OS=Rattus norvegicus GN=... [more]
RL31_PIG1.862e-2751.6960S ribosomal protein L31 OS=Sus scrofa GN=RPL31 P... [more]
RL31_MOUSE1.862e-2751.6960S ribosomal protein L31 OS=Mus musculus GN=Rpl31... [more]
RL31_MARMO1.862e-2751.6960S ribosomal protein L31 OS=Marmota monax GN=RPL3... [more]
RL31_HUMAN1.862e-2751.6960S ribosomal protein L31 OS=Homo sapiens GN=RPL31... [more]
RL31_BOVIN1.862e-2751.6960S ribosomal protein L31 OS=Bos taurus GN=RPL31 P... [more]
RL31_XENLA2.432e-2751.6960S ribosomal protein L31 OS=Xenopus laevis GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionC03005E12SK OF2 Citrus clementina cDNA clone C03005E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291227 ID=CX291227; Name=CX291227; organism=Citrus clementina; type=EST; length=500bp
GTGAAAGAGAGAGAAAATGGTGGAGAAGACCAAGGGACGAAAGGAGGAGG
TGGTGACCAGAGAGTTCACCATCAACCTTCACAAGCGTCTACATGGCTGT
ACATTCAAGAAGAAAGCTCCAAAAGCCATTAAGGAGATCAGGAAATTTGC
AGAGAAAGCTATGGGCACTAAGGATGTTAGGGTTGATGTCAAATTGAACA
AGCAAATCTGGAGCAGGGGCATCCGAAGTGTTCCAAAGAGGGTTAGGGTT
CGCATTGCTCGCAGGAGGAACGATGATGAAGACGCTAAGGAAGAGCTGTA
CTCTCTTGTAACTGTTGCAGAAATCCCACCAGAAGGACTGAGGGGGCTTG
GCACCAAGGTCATTGAAGATGAGGATTAAATTTAACACTCTGTTCAAAGA
AAACCGTTGGATAGGAAGGATAGGTTTACATGATAGTTTTGGCATGCTAT
TCAAGTGTTATGAGAAAGACTAGTGTTTTTTTCCATCTGTTTGAACTTTA
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