CX291240

Overview
NameCX291240
Unique NameCX291240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length212
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH  AEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:  111 IKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH  AEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:  112 IKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEM GH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMCGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            I+PEMIGH   EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:  116 IRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            I+PEMIGH   EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:  115 IRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153          
The following BLAST results are available for this feature:
BLAST of CX291240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS15_MOUSE1.226e-1389.7440S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]
RS15_MESAU1.226e-1389.7440S ribosomal protein S15 OS=Mesocricetus auratus ... [more]
RS15_HUMAN1.226e-1389.7440S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
RS15_CHICK1.226e-1389.7440S ribosomal protein S15 OS=Gallus gallus GN=RPS1... [more]
RS15_BOVIN1.226e-1389.7440S ribosomal protein S15 OS=Bos taurus GN=RPS15 P... [more]
RS155_ARATH1.601e-1389.7440S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS153_ARATH1.601e-1389.7440S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS15_XIPMA4.659e-1387.1840S ribosomal protein S15 OS=Xiphophorus maculatus... [more]
RS15B_SCHPO7.947e-1384.6240S ribosomal protein S15-B OS=Schizosaccharomyces... [more]
RS15A_SCHPO7.947e-1384.6240S ribosomal protein S15-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC03005G01SK OF2 Citrus clementina cDNA clone C03005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291240 ID=CX291240; Name=CX291240; organism=Citrus clementina; type=EST; length=212bp
AAATCAAGCCGGAAATGATTGGGCATTAACCTGCTGAGTTCTCTATCTCA
TACAAGCCTGTGAAGCATGGTAGACCTGGTATTGGTGCTACCCATTCCTC
AAGGTTCATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGATATTTAG
CTTATTGTTATTTTCAGAAAACATCGAAGTTGATCAAATTTTTTGTGGTT
ACTTTTTTTTTT
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