CX291281

Overview
NameCX291281
Unique NameCX291281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  319 DGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            DGSG+YKTV EAVA+AP++SKTRYVI +K G Y            +M +GDG   TIIT S NV DGSTTF
Sbjct:   14 DGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF 84          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 53/172 (30.81%), Postives = 80/172 (46.51%), Query Frame = 1
Query:   28 EDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVT---SRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            +D   WLS   T   TC++ L        E  L       +N+LAI+  +      +   + LR+ +   + V       R LL+ S             DGSG Y+T+K A+   P+ S+ R +IYVKKG Y            +++VGDG   +I++G LNV+DG+ TFK
Sbjct:  166 DDLRTWLSSAGTYQRTCVETLAPDMRPFGESHLKNSTELTSNALAIITWLG----KIADSFKLRRRLLTTADVEVDFHAGRRLLQ-STDLRKVADIVVAKDGSGKYRTIKRALQDVPEKSEKRTIIYVKKGVYFENVKVEKKMWNVIVVGDGESKSIVSGRLNVIDGTPTFK 332          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 54/185 (29.19%), Postives = 92/185 (49.73%), Query Frame = 1
Query:   31 DAHAWLSGVLTNHVTCLDGLDGSATKL-----------MEPRLVELMARAANSLAILVAIS-----PYNTNVIQQYYLRKEIQFPSWVTSRD-RLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            D    L+ V+T   TCLDG   S  +            ++  ++++    +NSL +L  IS     P ++ V        ++++PSW++  D RLL  P Q            DG+GN+ T+ +AV +AP+ S+TR++IY+K G Y            +M +GDG+  T+I  + + +DG +TF+
Sbjct:  124 DISMLLTNVMTYQDTCLDGFSTSDNENNNDMTYELPENLKEIILDISNNLSNSLHMLQVISRKKPSPKSSEV--------DVEYPSWLSENDQRLLEAPVQETNYNLSVAI--DGTGNFTTINDAVFAAPNMSETRFIIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQ 298          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 53/175 (30.29%), Postives = 77/175 (44.00%), Query Frame = 1
Query:   31 DAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVEL---MARAANSLAILVAISPYNTNVIQQYY-----LRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            D   WL+G L++  TCLDG   + TK  E     L   M  ++N++ ++ A+S          Y     L  +   PSWV    R LL                DGSG +KT+ +A+ + P  +   +VI+VK G Y            + ++GDG   T  TGSLN  DG  T+
Sbjct:   36 DLKVWLTGTLSHQQTCLDGFANTTTKAGETMTKVLKTSMELSSNAIDMMDAVSRILKGFDTSQYSVSRRLLSDDGIPSWVNDGHRRLLAGGNVQPNAVVAQ---DGSGQFKTLTDALKTVPPKNAVPFVIHVKAGVYKETVNVAKEMNYVTVIGDGPTKTKFTGSLNYADGINTY 207          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 58/178 (32.58%), Postives = 83/178 (46.63%), Query Frame = 1
Query:   25 NEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMAR-----AANSLAILVA---ISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            N+D H WLS  LTN  TC   L   ++   E   ++  AR       NSL + V+    S  ++N+     L  +  FP+WV+S DR LL  S             DGSG + +V EA+AS  +    R VI++  GTY            +M+VGDG   T+I GS +   G  T++
Sbjct:  129 NDDVHTWLSAALTNQETCKQSLSEKSSFNKEGIAIDSFARNLTGLLTNSLDMFVSDKQKSSSSSNLTGGRKLLSDHDFPTWVSSSDRKLLEAS-VEELRPHAVVAADGSGTHMSVAEALASL-EKGSGRSVIHLTAGTYKENLNIPSKQKNVMLVGDGKGKTVIVGSRSNRGGWNTYQ 304          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 61/176 (34.66%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   31 DAHAWLSGVLTNHVTCLDGL-DGSATKLMEPRL--VELMARAANSLAI----LVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKT--RYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            DA  WLS  LTN  TC  G  D + T  + P +   ++    +N LA+    L A +  NT   Q+        FP+W++ +D+ LLR  +            DGSG++ TV+ A+  A     T  R+VIYVK+G Y            +M+VGDGM  TIITG  +V  G TT+
Sbjct:  136 DAQTWLSTALTNTETCRRGSSDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGNTTANQK-------GFPTWLSRKDKRLLRAVRANLVVAK-----DGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVQGGYTTY 299          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 55/183 (30.05%), Postives = 82/183 (44.81%), Query Frame = 1
Query:    4 RHEGTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMAR-----AANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAP-DNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            R    +  ED H WLS  LTN  TC   L   +        ++ +AR       +SL + V++   +  +     L K+  FP++V S ++  L  +             DGSG +KT+ EA+ S    +S  R  IY+K GTY            +M+VGDG   T+I GS +   G TT+K
Sbjct:  114 RIHADNDEEDVHTWLSAALTNQDTCEQSLQEKSESYKHGLAMDFVARNLTGLLTSSLDLFVSVKSKHRKL-----LSKQEYFPTFVPSSEQRRLLEAPVEELNVDAVVAPDGSGTHKTIGEALLSTSLASSGGRTKIYLKAGTYHENINIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYK 291          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.388e-13
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  262 LLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            L+  P Q            DGSGN+ TV EAVA+AP+N    +VIY+K+G Y            L +VGDG DLT+++G LN VDG  TF
Sbjct:   32 LISTPDQALKDKADLIVAKDGSGNFTTVNEAVAAAPENGVKPFVIYIKEGLYKEVIRIGKKKTNLTLVGDGRDLTVLSGDLNGVDGIKTF 121          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 59/172 (34.30%), Postives = 81/172 (47.09%), Query Frame = 1
Query:   31 DAHAWLSGVLTNHVTCLDGL-DGSATKLMEPRL--VELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKT--RYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            DA  WLS  LTN  TC  G  D + +    P +   ++    +N LA+  A+     N            FP+WV+ ++R LL   Q            DGSG++KTV+ A+  A     T  R+VIYVK+G Y            +M+VGDGM  TIITG  +V  G TT+
Sbjct:  138 DAQTWLSTALTNTETCRRGSSDLNVSDFTTPIVSNTKISHLISNCLAVNGALLTAGKN---DSTTGDSKGFPTWVSRKERRLL---QLQSVRANLVVAKDGSGHFKTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENLNVRLNNDNIMLVGDGMRYTIITGGRSVKGGYTTY 303          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.040e-13
Identity = 61/203 (30.05%), Postives = 90/203 (44.33%), Query Frame = 1
Query:   19 SSNEDAHAWLSGVLTNHVTCLDG-----LDGSATKLMEPRLVELMARA-ANSLAILVAISPYNTNVIQQY-----------------------YLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPD--NSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            SS  D    LS  + N  TC +G     L  S +K    +    + ++ +NSLA+  A +     V ++Y                        L  + +FPSW    DR LL  S+            DGSG+Y ++++AV +A        R VIYVK G Y            +M++GDG+D TI+TG+ NV DG+TTF+
Sbjct:  129 SSPHDRQTSLSAAIANQDTCRNGFRDFKLTSSYSKYFPVQFHRNLTKSISNSLAVTKAAAEAEA-VAEKYPSTGFTKFSKQRSSAGGGSHRRLLLFSDEKFPSWFPLSDRKLLEDSKTTAKADLVVAK-DGSGHYTSIQQAVNAAAKLPRRNQRLVIYVKAGVYRENVVIKKSIKNVMVIGDGIDSTIVTGNRNVQDGTTTFR 329          
The following BLAST results are available for this feature:
BLAST of CX291281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PME_DAUCA4.316e-1557.75Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME24_ARATH5.637e-1530.81Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME39_ARATH9.615e-1529.19Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_MEDSA2.797e-1430.29Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME35_ARATH2.797e-1432.58Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME59_ARATH3.654e-1434.66Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME16_ARATH1.063e-1330.05Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME56_ARATH1.388e-1343.33Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME60_ARATH1.813e-1334.30Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME6_ARATH4.040e-1330.05Probable pectinesterase/pectinesterase inhibitor 6... [more]

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Properties
Property NameValue
Genbank descriptionC03006C02SK OF2 Citrus clementina cDNA clone C03006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291281 ID=CX291281; Name=CX291281; organism=Citrus clementina; type=EST; length=534bp
ATTCGGCACGAGGGGACAAGTTCCAACGAAGATGCGCATGCATGGCTAAG
TGGCGTTCTTACTAACCACGTCACGTGCTTGGACGGCCTAGATGGCTCAG
CTACGAAGTTGATGGAGCCAAGGCTCGTTGAGTTGATGGCAAGAGCTGCA
AATTCTCTAGCCATTTTAGTGGCAATTTCCCCATACAACACCAACGTCAT
CCAGCAATATTACTTGAGAAAAGAAATTCAATTTCCGTCGTGGGTGACAA
GCAGGGACCGGTTGCTTTTACGGCCTTCTCAGGCTGAAGCAGCTAAGGCC
AACGTTGTGGTGGCTAAGGATGGAAGTGGAAACTATAAGACTGTGAAAGA
GGCCGTGGCATCAGCACCAGACAACAGCAAGACAAGGTACGTTATTTATG
TGAAGAAAGGAACGTACAAAGAAAATGTCGAGGTGGGCAAGAAAAAGAAA
AATCTTATGATTGTTGGTGATGGCATGGATTTGACCATCATCACCGGCAG
CCTTAACGTCGTTGACGGATCTACAACCTTCAAA
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