CX291281

Overview
NameCX291281
Unique NameCX291281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 47/177 (26.55%), Postives = 80/177 (45.20%), Query Frame = 1
Query:   31 DAHAWLSGVLTNHVTCLDGLDGSATKL-MEPRLVELMARAANSLAILVAISPYNTNV--------IQQYYLRKEIQ-FPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            D  +WLS V++   TC+DG +    K  +           +NSLA++ ++  Y ++V        ++     KE     SW+++++R +L+               DGSGN+ T+  A+ + P   + RY IY+K G Y            + +VGDG   TI+TG+ +      TF
Sbjct:  196 DLDSWLSAVMSYQETCVDGFEEGKLKTEIRKNFNSSQVLTSNSLAMIKSLDGYLSSVPKVKTRLLLEARSSAKETDHITSWLSNKERRMLKAVDVKALKPNATVAKDGSGNFTTINAALKAMPAKYQGRYTIYIKHGIYDESVIIDKKKPNVTMVGDGSQKTIVTGNKSHAKKIRTF 372          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-12
Identity = 55/182 (30.22%), Postives = 80/182 (43.96%), Query Frame = 1
Query:   28 EDAHAWLSGVLTNHVTCLDGLDGSATKL---MEPRLVELMARAANSLAILVAISPYNTNVIQQY-----------YLRK----EIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDG 519
            ED   WLSG +    TC+D  + + +KL   M+          +N LA++  IS    N++ ++           Y RK    E   PSWV    R L+  +             DGSG YKT+ EA+ + P  ++  +VIY+K+G Y            +  +GDG   T ITGSLN   G
Sbjct:  156 EDLRVWLSGSIAYQQTCMDTFEETNSKLSQDMQKIFKTSRELTSNGLAMITNIS----NLLGEFNVTGVTGDLGKYARKLLSAEDGIPSWVGPNTRRLM--ATKGGVKANVVVAHDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYNEKVDVTKKMTHVTFIGDGPTKTKITGSLNYYIG 331          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.618e-12
Identity = 53/174 (30.46%), Postives = 79/174 (45.40%), Query Frame = 1
Query:   31 DAHAWLSGVLTNHVTCLDGL-DGSATKLMEP-----RLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVA-SAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            DA  WLS   TN  TC  G  D + +  + P      L +L+        +L+    + T    + Y      FPSWV+  +R LL  +             D SG++++++ A+  +A    K+R+VIYVKKG Y            +M+VGDG   TIIT   +V  G TT+
Sbjct:  190 DAQTWLSTAQTNIETCRSGSEDLNVSDFVMPVISNKNLSDLIGNCLAVNGVLMKQHDHTTTANHKEY------FPSWVSRHERRLLVSASLAKSSPHLVVAQDRSGHFRSIQAAINFAARRRFKSRFVIYVKKGVYRENIDVGNDNHNIMLVGDGERKTIITSGRSVQHGYTTY 357          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.466e-12
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 1
Query:   28 EDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMAR---AANSLAILVAISPY--NTNVIQ-----QYYLRK----EIQFPSWVTSRDRLLL--RPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLN 507
            ED   WLSG +    TC+D      + LM+  L         ++NSLA++  IS    N+N+         Y RK    E   P+WV    R L+  +               DG+G +KT+ +A+ + P  +K  ++I++K+G Y            +  +GDG + T+ITGSLN
Sbjct:  150 EDLRVWLSGSIAFQQTCMDSFGEIKSNLMQDMLKIFKTSRELSSNSLAMVTRISTLIPNSNLTGLTGALAKYARKLLSTEDSIPTWVGPEARRLMAAQGGGPGPVKANAVVAQDGTGQFKTITDALNAVPKGNKVPFIIHIKEGIYKEKVTVTKKMPHVTFIGDGPNKTLITGSLN 325          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.950e-12
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  319 DGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            DGSGN+ TV  AVA+A D+S  R+VIY+K+G Y            LM +GDG+  T I G+ +VVDG TTF+
Sbjct:   15 DGSGNFTTVGAAVAAAKDSSTARFVIYIKEGAYFEYVDVDKKKTNLMFIGDGIGKTWIKGNRSVVDGWTTFR 86          
The following BLAST results are available for this feature:
BLAST of CX291281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PME45_ARATH1.175e-1226.55Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME58_ARATH1.535e-1230.22Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME33_ARATH2.618e-1230.46Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME23_ARATH4.466e-1228.98Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME_ACTDE9.950e-1248.61Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC03006C02SK OF2 Citrus clementina cDNA clone C03006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291281 ID=CX291281; Name=CX291281; organism=Citrus clementina; type=EST; length=534bp
ATTCGGCACGAGGGGACAAGTTCCAACGAAGATGCGCATGCATGGCTAAG
TGGCGTTCTTACTAACCACGTCACGTGCTTGGACGGCCTAGATGGCTCAG
CTACGAAGTTGATGGAGCCAAGGCTCGTTGAGTTGATGGCAAGAGCTGCA
AATTCTCTAGCCATTTTAGTGGCAATTTCCCCATACAACACCAACGTCAT
CCAGCAATATTACTTGAGAAAAGAAATTCAATTTCCGTCGTGGGTGACAA
GCAGGGACCGGTTGCTTTTACGGCCTTCTCAGGCTGAAGCAGCTAAGGCC
AACGTTGTGGTGGCTAAGGATGGAAGTGGAAACTATAAGACTGTGAAAGA
GGCCGTGGCATCAGCACCAGACAACAGCAAGACAAGGTACGTTATTTATG
TGAAGAAAGGAACGTACAAAGAAAATGTCGAGGTGGGCAAGAAAAAGAAA
AATCTTATGATTGTTGGTGATGGCATGGATTTGACCATCATCACCGGCAG
CCTTAACGTCGTTGACGGATCTACAACCTTCAAA
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