CX291288

Overview
NameCX291288
Unique NameCX291288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 51/157 (32.48%), Postives = 69/157 (43.95%), Query Frame = 2
Query:   14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            N S    ++ T +    P   W ID     P   G   + +V ID F+ W+E     + T K  T  +   +  R+G+P  L TDNG  F +   +     LGI+ K      PQS+GQVE  N+TIK  L K  L      WV  L   L+  R T
Sbjct: 1431 NASKSAVKQGTRVRGHRPGTHWEIDFTEIKPGLYGYK-YLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1586          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVFP (Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 2
Query:   14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            N S    ++ T +    P   W ID     P   G   + +V +D F+ WVE     + T K  T  +   +  R+G+P  L TDNG  F +   +     LG++ K      PQS+GQVE  N+TIK  L K  L      WV  L   L+  R T
Sbjct:  897 NASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1052          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVF5 (Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 2
Query:   14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            N S    ++ T +    P   W ID     P   G   + +V +D F+ WVE     + T K  T  +   +  R+G+P  L TDNG  F +   +     LG++ K      PQS+GQVE  N+TIK  L K  L      WV  L   L+  R T
Sbjct:  897 NASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1052          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVAV (Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 47/140 (33.57%), Postives = 65/140 (46.43%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            P + W ID     P   G   + +V +D F+ WVE     R T +  +  +   +  R+G+P  L +DNG  F +   +     LGI+ K      PQS+GQVE  N+TIK  L K  L A    WV  L   L+  R T
Sbjct:  909 PGSHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT 1047          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVRK (Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 48/140 (34.29%), Postives = 63/140 (45.00%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            P   W ID     P   G   + +V +D F+ WVE       T K  T  +   +  R+G+P  L TDNG  F +   +   + LGI+ K      PQS+GQVE  N+TIK  L K  L      WV  L   L+  R T
Sbjct:  294 PGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT 432          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 48/140 (34.29%), Postives = 63/140 (45.00%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            P   W ID     P   G   + +V +D F+ WVE       T K  T  +   +  R+G+P  L TDNG  F +   +   + LGI+ K      PQS+GQVE  N+TIK  L K  L      WV  L   L+  R T
Sbjct:  909 PGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT 1047          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_XMRV6 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            P   W +D     P   G   + +V +D F+ WVE     R T K  +  +  ++  R+G+P  L +DNG  F +   +     LGI+ K      PQS+GQVE  N+TIK  L K  L +    WV  L   L+  R T
Sbjct: 1446 PGTHWEVDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT 1584          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_XMRV4 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            P   W +D     P   G   + +V +D F+ WVE     R T K  +  +  ++  R+G+P  L +DNG  F +   +     LGI+ K      PQS+GQVE  N+TIK  L K  L +    WV  L   L+  R T
Sbjct: 1446 PGTHWEVDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT 1584          
The following BLAST results are available for this feature:
BLAST of CX291288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
POL_MLVMO5.068e-1132.48Gag-Pol polyprotein OS=Moloney murine leukemia vir... [more]
POL_MLVFP5.068e-1131.85Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVF55.068e-1131.85Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVAV5.068e-1133.57Pol polyprotein OS=AKV murine leukemia virus GN=po... [more]
POL_MLVRK6.619e-1134.29Pol polyprotein (Fragment) OS=Radiation murine leu... [more]
POL_MLVRD6.619e-1134.29Pol polyprotein OS=Radiation murine leukemia virus... [more]
POL_XMRV68.645e-1132.86Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]
POL_XMRV48.645e-1132.86Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]

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Properties
Property NameValue
Genbank descriptionC03006C09SK OF2 Citrus clementina cDNA clone C03006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291288 ID=CX291288; Name=CX291288; organism=Citrus clementina; type=EST; length=487bp
GCAGAGTTTGGCAAATTTCTCTAACCGACCGCCAGAGAAGCTCACCTCCA
TGACCTCCCCCTGGCCATTTGCTCAATGGGGAATTGATCTGATCGGCCCA
TTGCCAAAGGCACGAGGAGCTGCAACACATGCAATAGTTGCTATAGATTA
CTTCACGAAGTGGGTAGAGGTAGAAGCCCTTAGCAGGATCACAGAGAAGA
AAACAACAGACTTCGTGTGGAGAAACCTGGTCTGTCGATACGGGATCCCT
TATGCCTTGGTAACGGACAATGGCAGGCAGTTCGATAATCACAGCTTCCG
GGAGTTCTGCCAGAACCTCGGGATAGAGCTGAAGTATTGCTCGCCTGCTC
ACCCTCAATCGAATGGACAAGTAGAAGCAGCCAACAAGACCATCAAGAGA
CTTTTGAAAACCAGGCTTGGAGCAAAAAAGGGTGCGTGGGTTGACGAGCT
GTCAGGTGTGCTATGGGCATACAGAACAACCCACAAA
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