CX291288
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11 Identity = 51/157 (32.48%), Postives = 69/157 (43.95%), Query Frame = 2 Query: 14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 N S ++ T + P W ID P G + +V ID F+ W+E + T K T + + R+G+P L TDNG F + + LGI+ K PQS+GQVE N+TIK L K L WV L L+ R T Sbjct: 1431 NASKSAVKQGTRVRGHRPGTHWEIDFTEIKPGLYGYK-YLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1586
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVFP (Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11 Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 2 Query: 14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 N S ++ T + P W ID P G + +V +D F+ WVE + T K T + + R+G+P L TDNG F + + LG++ K PQS+GQVE N+TIK L K L WV L L+ R T Sbjct: 897 NASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1052
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVF5 (Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11 Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 2 Query: 14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 N S ++ T + P W ID P G + +V +D F+ WVE + T K T + + R+G+P L TDNG F + + LG++ K PQS+GQVE N+TIK L K L WV L L+ R T Sbjct: 897 NASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1052
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVAV (Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11 Identity = 47/140 (33.57%), Postives = 65/140 (46.43%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 P + W ID P G + +V +D F+ WVE R T + + + + R+G+P L +DNG F + + LGI+ K PQS+GQVE N+TIK L K L A WV L L+ R T Sbjct: 909 PGSHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT 1047
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVRK (Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11 Identity = 48/140 (34.29%), Postives = 63/140 (45.00%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 P W ID P G + +V +D F+ WVE T K T + + R+G+P L TDNG F + + + LGI+ K PQS+GQVE N+TIK L K L WV L L+ R T Sbjct: 294 PGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT 432
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11 Identity = 48/140 (34.29%), Postives = 63/140 (45.00%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 P W ID P G + +V +D F+ WVE T K T + + R+G+P L TDNG F + + + LGI+ K PQS+GQVE N+TIK L K L WV L L+ R T Sbjct: 909 PGTHWEIDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT 1047
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_XMRV6 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11 Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 P W +D P G + +V +D F+ WVE R T K + + ++ R+G+P L +DNG F + + LGI+ K PQS+GQVE N+TIK L K L + WV L L+ R T Sbjct: 1446 PGTHWEVDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT 1584
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_XMRV4 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11 Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 P W +D P G + +V +D F+ WVE R T K + + ++ R+G+P L +DNG F + + LGI+ K PQS+GQVE N+TIK L K L + WV L L+ R T Sbjct: 1446 PGTHWEVDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT 1584 The following BLAST results are available for this feature:
BLAST of CX291288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291288 ID=CX291288; Name=CX291288; organism=Citrus clementina; type=EST; length=487bpback to top |