CX291300

Overview
NameCX291300
Unique NameCX291300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 300.056 bits (767), Expect = 5.205e-81
Identity = 146/167 (87.43%), Postives = 159/167 (95.21%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            +FDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN+KGRLSQEEIDRMVREAEEFAEEDKKVKE+IDARN LETYVYNMKN + DKDKLADKLE++EK+K+E A+KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPI++AVYQRSGGAPG   +
Sbjct:  487 KFDLNGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDAD 653          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.514e-80
Identity = 149/163 (91.41%), Postives = 157/163 (96.32%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 501
            +FDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQEEI+RMVREAEEFAEEDKKVKEKIDARNSLETY+YNMKNQI+D DKLADKLESDEK+KIE AVKEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGG  G
Sbjct:  490 KFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNSLETYIYNMKNQISDADKLADKLESDEKEKIEGAVKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGPSG 652          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.353e-57
Identity = 98/162 (60.49%), Postives = 136/162 (83.95%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 498
            +FDL+GIPPAPRG PQIEV+FE+DANGIL V AEDKGTG  EKI ITND+ RL+ E+IDRM+R+AE+FA+EDKK+KE++++RN LE+Y Y++KNQI DKDKL  KL  DEK+K+E+A+ E+++WL+ N  A+ E+Y+++ K++EA+  P+I  +YQ +GGAP
Sbjct:  481 KFDLTGIPPAPRGIPQIEVSFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPEDIDRMIRDAEKFADEDKKLKERVESRNELESYAYSLKNQIGDKDKLGAKLSDDEKNKLESAIDESIKWLEQNPDADPEEYKKQKKDLEAIVQPVIAKLYQGAGGAP 642          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.686e-55
Identity = 104/166 (62.65%), Postives = 131/166 (78.92%), Query Frame = 1
Query:   16 FDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+ EEI+RMV +AE+FAEEDKK+KE+IDARN LE+Y Y++KNQI DK+KL  KL S++K+ IE AV+E +EWL+ +Q A+ ED++ K KE+E V  PI++ +Y  S G P  G E
Sbjct:  480 FDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDARNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKSKKKELEEVVQPIVSKLY-GSAGPPPTGEE 644          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 2.876e-55
Identity = 103/166 (62.05%), Postives = 131/166 (78.92%), Query Frame = 1
Query:   16 FDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+ EEI+RMV +AE+FAEEDKK+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  SGG P  G E
Sbjct:  483 FDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSGGPPPTGEE 647          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.756e-55
Identity = 101/166 (60.84%), Postives = 129/166 (77.71%), Query Frame = 1
Query:   16 FDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+ EEI+RMV +AE+FAEEDKK+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ IE AV+E +EWL+ +Q A+ ED++ K KE+E +  PI+  +Y  +G  P  G E
Sbjct:  483 FDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVTDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIVGKLYGGAGAPPPEGAE 648          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.093e-54
Identity = 102/166 (61.45%), Postives = 130/166 (78.31%), Query Frame = 1
Query:   16 FDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+ EEI+RMV +AE+FAEEDKK+KE+ID RN LE+Y Y++KNQI DK+KL  KL  ++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  SGG P  G E
Sbjct:  482 FDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSPEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSGGPPPTGEE 646          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.427e-54
Identity = 99/163 (60.74%), Postives = 133/163 (81.60%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 501
            +F+LSGIPPAPRG PQIEVTF++DANGILNV A +KGTGK++KITITNDKGRLS+EEID+MV EAE+F EED+K   ++ A+N LE+Y Y++KN IND  ++ DK+ +D+K+K+  A+ E + WLD +Q+A  E+YE+K KE+E+V NPII+  Y  +GGAPG
Sbjct:  457 KFELSGIPPAPRGVPQIEVTFDIDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDKMVSEAEKFKEEDEKEAARVQAKNQLESYAYSLKNTIND-GEMKDKIGADDKEKLTKAIDETISWLDASQAASTEEYEDKRKELESVANPIISGAYGAAGGAPG 618          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.427e-54
Identity = 102/166 (61.45%), Postives = 130/166 (78.31%), Query Frame = 1
Query:   16 FDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+ EEI+RMV +AE+FAEEDKK+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  S G P  G E
Sbjct:  482 FDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSAGPPPTGEE 646          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.427e-54
Identity = 102/166 (61.45%), Postives = 130/166 (78.31%), Query Frame = 1
Query:   16 FDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+ EEI+RMV +AE+FAEEDKK+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  S G P  G E
Sbjct:  482 FDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSAGPPPTGEE 646          
The following BLAST results are available for this feature:
BLAST of CX291300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP2_MAIZE5.205e-8187.43Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
BIP_SPIOL1.514e-8091.41Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
HSP7C_DROME2.353e-5760.49Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_CHICK1.686e-5562.6578 kDa glucose-regulated protein OS=Gallus gallus ... [more]
GRP78_MOUSE2.876e-5562.0578 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_XENLA3.756e-5560.8478 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_RAT1.093e-5461.4578 kDa glucose-regulated protein OS=Rattus norvegi... [more]
HSP71_CANAL1.427e-5460.74Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]
GRP78_PONAB1.427e-5461.4578 kDa glucose-regulated protein OS=Pongo abelii G... [more]
GRP78_MESAU1.427e-5461.4578 kDa glucose-regulated protein OS=Mesocricetus a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03006D12SK OF2 Citrus clementina cDNA clone C03006D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291300 ID=CX291300; Name=CX291300; organism=Citrus clementina; type=EST; length=574bp
ATTCGGCACGAGGAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGG
AACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAA
ATGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATC
ACAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGATCGTATGGTTCG
TGAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAGGAGAAGATCG
ATGCTCGCAACAGCCTTGAGACCTATGTCTATAACATGAAAAACCAGATT
AATGACAAGGACAAGCTTGCCGACAAGCTCGAATCTGATGAGAAGGACAA
GATTGAAACTGCTGTAAAGGAAGCCCTTGAATGGCTCGATGACAACCAGA
GTGCAGAGAAAGAGGACTATGAAGAGAAGCTCAAGGAGGTTGAAGCCGTT
TGCAACCCCATCATCACTGCTGTATATCAGAGATCTGGCGGAGCCCCCGG
TGCTGGCACTGAATCATCGGATGATGATGATTCACACGATGAGCTCTAAA
GAATCTTTACTTCGATTGACCATA
back to top