CX291395

Overview
NameCX291395
Unique NameCX291395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL5_RAT (Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 59/185 (31.89%), Postives = 102/185 (55.14%), Query Frame = -2
Query:  195 KHELNVSTYQMCVLMLFNSVDR--LSYKEIEQATEIPAPELKRCLQSLACVKG--KHVLRKEPM---SKDIAEDDAFFFNDKFTS-KFVKVK-------IGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 704
            +++L V+T+Q+ VL  +N   R  +S++ ++ ATE+P  EL+R L SL       + VL  +P     KD  E   F  N  F+  K  KV+       IG +  Q  +E   +E  + + + R  + + AI++IMK R+ + +  + TE+ + L++ FLP   +IK++IE LIE +++ RD+ D
Sbjct:  590 QYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDEAD 772          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL2_CAEEL (Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 52/160 (32.50%), Postives = 84/160 (52.50%), Query Frame = -2
Query:  207 YQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQ--RVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLER 680
            YQM  L+ F   D +  K+I +   +    L + ++++  V    +L  +   +++  D     N   TSK +K ++      +  E E +      +V +DRK  +E AIVRIMK R+VL HN +VTE+  Q + RF P+   IKK IE LIE+ +++R
Sbjct:  611 YQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDVT---LLTCD--DQNLTADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQR 765          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 58/185 (31.35%), Postives = 101/185 (54.59%), Query Frame = -2
Query:  195 KHELNVSTYQMCVLMLFNSVDR--LSYKEIEQATEIPAPELKRCLQSLACVKG--KHVLRKEPM---SKDIAEDDAFFFNDKFTS-KFVKVK-------IGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 704
            +++L V+T+Q+ VL  +N   R  +S++ ++ ATE+P  EL+R L SL       + VL  +P     KD  E   F  N  F+  K  KV+       IG +  Q  +E   +E  + + + R  + + AI++IMK R+ + +  + TE+ + L++ FLP   +IK+++E LIE  ++ RD+ D
Sbjct:  590 QYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQMEWLIEHRYIRRDEAD 772          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3_YEAST (Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/173 (28.90%), Postives = 89/173 (51.45%), Query Frame = -2
Query:  195 HELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEP-ENQETRQRVE---EDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 701
            +E++ S Y   + +LF   + L+  EI + T IP  ++K  + S++ +    +L+K   S ++     F  N  F+S   KVK+  +     S+  +N  T   V+    +   ++ A IVRIMK    L H  ++   TK+ QSR    P ++K+ I+ LIE+E+++R+  D
Sbjct:  568 YEISFSVYAGVIFLLFEDYEELTLGEIYELTHIPIDDVKSLVMSMSTIPRCKILKKSSSSGNMK----FSVNYFFSSPNRKVKVPVIACPLPSQKSDNLATASSVDTYDNEIVMELSAIIVRIMKTEGKLSHQQLLERTTKRTQSRLSLTPSILKRSIQLLIEKEYIQRNADD 736          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL5_RABIT (Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 58/185 (31.35%), Postives = 100/185 (54.05%), Query Frame = -2
Query:  195 KHELNVSTYQMCVLMLFNSVDR--LSYKEIEQATEIPAPELKRCLQSLACVKG--KHVLRKEPM---SKDIAEDDAFFFNDKFTS-KFVKVK-------IGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 704
            +++L V+T+Q+ VL  +N   R  +S++ ++ ATE+P  EL+R L SL       + VL  EP     KD  E   F  N +F+  K  KV+       IG +  Q  +E   +E  + + + R  +     ++IMK R+ + +  + TE+ + L++ FLP   +IK++IE LIE +++ RD+ D
Sbjct:  590 QYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTRKLYIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESD 772          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL5_CAEEL (Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = -2
Query:  207 GQKHELNVSTYQMCVLMLFN--SVDRLSYKEIEQATEIPAPELKRCLQSLAC---VKGKHVLRKEPMS----KDIAEDDAFFFNDKF-------TSKFVKVK-IGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLER 710
            G + +L  +T+QM VL  FN  + D++S + +  ATE+P  EL R L SL     ++ + +L   P +    +D  +   F  N  F       + +  KV  IG +    E+  E +   + +   R+ +++  IV+I+K R+      +  E+ + L+  F+PN  +IK++I+ LIE +++ER
Sbjct:  571 GGRFDLECTTFQMAVLFCFNDRAHDKISLETLRLATELPDAELNRTLLSLVAYPKMRYQILLCDVPSTTVTARDFTDSTKFLINHDFNVVKNGKSQQRGKVNLIGRLQLSLEANAEKEH--ESIVALRELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMER 753          
The following BLAST results are available for this feature:
BLAST of CX291395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL5_RAT7.535e-1531.89Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3[more]
CUL2_CAEEL9.841e-1532.50Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 S... [more]
CUL5_MOUSE2.192e-1431.35Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL3_YEAST4.884e-1428.90Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 ... [more]
CUL5_RABIT8.331e-1431.35Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=... [more]
CUL5_CAEEL8.621e-1128.11Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC03007E02SK OF2 Citrus clementina cDNA clone C03007E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291395 ID=CX291395; Name=CX291395; organism=Citrus clementina; type=EST; length=714bp
TAGTCTCAGTTTTTTTTTTTTTTTTTTGAAACACAACAAATATGAAGTAA
AATTGACCTGAACCTGTAGGTAATCTGAGAACAGTATTCCATCTTACAAA
TGGAGGATAGAATTCCAAAACCCCGTTAAAAAGTCCTGAAAGTGACACAA
CTAAAATTTTTTTTCTTTCAAGCAAGGTATCGGTACAATTTCCTGTCCAC
TTTGTCCCTCTCTAGAAACTCCCTTTCGATTAGGGACTCTATTCTTTTTT
TAATTACAACTGGATTCGGCAGAAACCGAGATTGCAGCTGCTTTGTGACT
TCAGTAACAATGTTATTGTGATCCAGCACCCGTCTTGCCTTCATGATCCT
TACAATCGCTGCCTCTATCTGGGGTTTCCTGTCTTCCTCCACTCTTTGTC
TGGTTTCCTGATTTTCCGGTTCAGACTCTCTTTGTGCAACCACTGTACCT
ATCTTAACCTTAACGAACTTGCTTGTGAACTTGTCGTTGAAGAAGAAGGC
ATCATCTTCAGCTATGTCTTTGCTCATGGGTTCCTTCCTAAGAACATGCT
TACCCTTGACACAGGCCAGCGACTGCAGGCACCTCTTCAATTCTGGGGCA
GGTATTTCTGTGGCCTGCTCAATTTCTTTGTAACTCAACCGATCAACGCT
ATTGAATAGCATCAGTACACACATCTGGTAAGTTGAAACATTCAGCTCAT
GTTTCTGGCCTTTT
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