CX291407

Overview
NameCX291407
Unique NameCX291407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291407 vs. ExPASy Swiss-Prot
Match: ML329_ARATH (MLP-like protein 329 OS=Arabidopsis thaliana GN=MLP329 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 42/150 (28.00%), Postives = 78/150 (52.00%), Query Frame = 3
Query:   69 SAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY-ADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLV-KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYI 512
            +  G    E+ +K SADK +   RD   LFP A  H  + + V +G+  +  ++++  Y  DG P  +V  E+ E +D+ N V+T++ ++G +++  K +  I   + K    +V K    +EK +DD P+PS    F      ++D+++
Sbjct:    2 ATSGTYVTEVPLKGSADKHYKRWRDENHLFPDAIGHHIQGVTVHDGEWDSHEAIKIWNYTCDGKP--EVFKERKE-IDDENMVITFRGLEGHVMEQLKVYDLIYQFSQKSPDDIVCKITMIWEKRTDDSPEPSNYMKFLKSVVADMDEHV 148          
BLAST of CX291407 vs. ExPASy Swiss-Prot
Match: IPRT1_CATRO (Probable intracellular pathogenesis-related protein T1 OS=Catharanthus roseus GN=PCKR3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 43/152 (28.29%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   78 GKLEVELEVKSS---ADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGEGSLVKWACEFE-KASDDVPDPSVI--KDFALKNFQEVDDYI 512
            G +  ++E+KSS   A  F   + D  TL  KA  +  KS+++L+GDG A G+++L+ + +G P+  V    +E +D+ N    Y ++DG+ L+   ++   ++ + P G GS+ K    F  KA  ++ +  +   K+ A +  + V+ Y+
Sbjct:    2 GVISYDMEIKSSLSAAKLFKAFVLDVGTLINKALPNVIKSVEILQGDGGA-GTIKLVHFGEGGPVPSVK-HHVEELDKDNMSYKYSIVDGEALMPGLQSISYVIKIEPSGHGSVCKHNTTFHFKAGSNINEDEIKAGKERAAEMIKAVEAYV 151          
The following BLAST results are available for this feature:
BLAST of CX291407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ML329_ARATH4.787e-1128.00MLP-like protein 329 OS=Arabidopsis thaliana GN=ML... [more]
IPRT1_CATRO4.787e-1128.29Probable intracellular pathogenesis-related protei... [more]

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Properties
Property NameValue
Genbank descriptionC03007F02SK OF2 Citrus clementina cDNA clone C03007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291407 ID=CX291407; Name=CX291407; organism=Citrus clementina; type=EST; length=690bp
TGCAATTGCTAGCAAGCTAATAACATCAGTCTGATCATCCATCTCAACAC
AACAAATCGAGAATGGCTTCTGCAGGTGGGAAGCTTGAAGTCGAGCTTGA
GGTGAAGTCATCAGCTGACAAATTCTGGGGAAGCATTAGGGACTCCACCA
CTCTGTTTCCCAAGGCATTCTCTCACGATTACAAGAGCATCCAAGTGCTG
GAGGGCGACGGCAAGGCCCCTGGCTCTGTGCGTCTCATCACTTATGCTGA
CGGTTCTCCAATTGTGAAGGTATCGACAGAGAAGATCGAGAATGTAGATG
AAGCAAACAAGGTGGTTACTTACAAGGTAATTGATGGGGACCTGTTGAAG
TACTACAAGGCTTTCAAAGGCATCGTGAGTGTTAATCCGAAGGGGGAAGG
GAGCTTGGTGAAGTGGGCTTGTGAGTTTGAAAAGGCAAGCGATGATGTTC
CCGATCCAAGCGTCATCAAGGACTTTGCACTCAAGAACTTTCAGGAAGTG
GATGACTATATTCTCAAGGCCAATTAATTAGGAGCAAAAGCTGCCTAAGC
ACGCACTTACGTTGCATATATATCATGTATTAATCTTGTGCTTGTGTTGT
TGGACTTTTAAAATAACAATATTATTAAGAATGTGGAGTTATTACCTTCC
GCTATGTATTCTATACATTGTTTATTCTGTTATGTCTCTG
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