CX291434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_FENV1 (Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18 Identity = 58/200 (29.00%), Postives = 96/200 (48.00%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+I+S + +++ ++++PPP+ REVR FLG AGF R +I F++++ PL L + PF + + AFE LK+ L S+P + P+ S PF L D VL Q++ + Y S L+ + + M A ++ +G + ++T HA + D ARL + LL + D Sbjct: 244 LGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDEKQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHALEAIVRQTPDRWITNARLTHYQALLLDTD 443
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_BAEVM (Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17 Identity = 57/200 (28.50%), Postives = 94/200 (47.00%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+I+S + +++ ++ +PPP+ REVR FLG AGF R +I F++++ PL L + PF + +AFE LK+ L S+P + P+ S PF L D VL Q++ + Y S L+ + + M A ++ +G + ++T H + D ARL + LL + D Sbjct: 387 LGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHTLEAIVRQPPDRWITNARLTHYQALLLDTD 586
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15 Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 1 Query: 10 YGQQGIA-LGH--IISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPF 324 +GQ IA LGH IIS +G+ D AK++ + P PK E+R FLG G+YRRF+K++ K+ RPL LL K+ + + +AF+ LK +T+ P++ P+ LPF Sbjct: 25 FGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_KORV (Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14 Identity = 48/170 (28.24%), Postives = 83/170 (48.82%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDH 540 LG+++ + A+ + +P P T R+VR FLG AGF R +I F+ ++ PL L + VPF + ++ AF ++K+ L S+P + P+ + PF L D + VL Q + + Y S L+ + T K + AV L+ +G ++++ H Sbjct: 348 LGYLLKGGKRWLTPARKATVMKIPTPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAHQEAFGRIKEALLSAPALALPDLTKPFALYVDEKEGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVIAPH 517
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_GALV (Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14 Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHA 543 LG+++ + A+ + +P P T R+VR FLG AGF R +I F+ ++ PL L + +PF++ + AF+ +K+ L S+P + P+ + PF L D VL Q + + Y S L+ + T K + AV L+ +G + ++ H+ Sbjct: 386 LGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASHS 556
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVFP (Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 52/200 (26.00%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + LL + D Sbjct: 394 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 593
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVFF (Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 52/200 (26.00%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + LL + D Sbjct: 394 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 593
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 52/200 (26.00%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + LL + D Sbjct: 928 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 1127
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 1 Query: 118 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLT---KKDAK-ARLIRWVLLLQEFDLE 627 ++++ FLG + +I + + +PL + L +D + ++D+ K+K+ L S P + P + + DAS+ G +L + ++ YAS A+ NY + EKE+LAV+ ++KF YL + +I TD+ + + K D K RL+RW + L ++D + Sbjct: 462 KQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFD 635
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_XMRV6 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + +L + D Sbjct: 926 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 1125 The following BLAST results are available for this feature:
BLAST of CX291434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291434 ID=CX291434; Name=CX291434; organism=Citrus clementina; type=EST; length=706bpback to top |