CX291434

Overview
NameCX291434
Unique NameCX291434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_FENV1 (Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 58/200 (29.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+I+S     +   +++ ++++PPP+  REVR FLG AGF R +I  F++++ PL  L  +  PF + +    AFE LK+ L S+P +  P+ S PF L  D        VL Q++      + Y S  L+     +    + M A    ++      +G  + ++T HA    +    D     ARL  +  LL + D
Sbjct:  244 LGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDEKQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHALEAIVRQTPDRWITNARLTHYQALLLDTD 443          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_BAEVM (Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 57/200 (28.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+I+S     +   +++ ++ +PPP+  REVR FLG AGF R +I  F++++ PL  L  +  PF +     +AFE LK+ L S+P +  P+ S PF L  D        VL Q++      + Y S  L+     +    + M A    ++      +G  + ++T H     +    D     ARL  +  LL + D
Sbjct:  387 LGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHTLEAIVRQPPDRWITNARLTHYQALLLDTD 586          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   10 YGQQGIA-LGH--IISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPF 324
            +GQ  IA LGH  IIS +G+  D AK++ +   P PK   E+R FLG  G+YRRF+K++ K+ RPL  LL K+    + +   +AF+ LK  +T+ P++  P+  LPF
Sbjct:   25 FGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_KORV (Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 48/170 (28.24%), Postives = 83/170 (48.82%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDH 540
            LG+++      +  A+   +  +P P T R+VR FLG AGF R +I  F+ ++ PL  L  + VPF + ++   AF ++K+ L S+P +  P+ + PF L  D  +     VL Q +      + Y S  L+     + T  K + AV   L+      +G  ++++  H
Sbjct:  348 LGYLLKGGKRWLTPARKATVMKIPTPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAHQEAFGRIKEALLSAPALALPDLTKPFALYVDEKEGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVIAPH 517          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_GALV (Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHA 543
            LG+++      +  A+   +  +P P T R+VR FLG AGF R +I  F+ ++ PL  L  + +PF++ +    AF+ +K+ L S+P +  P+ + PF L  D        VL Q +      + Y S  L+     + T  K + AV   L+      +G  + ++  H+
Sbjct:  386 LGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASHS 556          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVFP (Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 52/200 (26.00%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  LL + D
Sbjct:  394 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 593          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVFF (Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 52/200 (26.00%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  LL + D
Sbjct:  394 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 593          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 52/200 (26.00%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  LL + D
Sbjct:  928 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 1127          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  118 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLT---KKDAK-ARLIRWVLLLQEFDLE 627
            ++++ FLG   +   +I   + + +PL + L +D  + ++D+      K+K+ L S P +  P  +    +  DAS+   G +L    +   ++  YAS     A+ NY + EKE+LAV+  ++KF  YL   + +I TD+    + +    K D K  RL+RW + L ++D +
Sbjct:  462 KQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFD 635          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_XMRV6 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  +L + D
Sbjct:  926 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 1125          
The following BLAST results are available for this feature:
BLAST of CX291434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
POL_FENV17.253e-1829.00Pol polyprotein (Fragment) OS=Feline endogenous vi... [more]
POL_BAEVM3.599e-1728.50Pol polyprotein OS=Baboon endogenous virus (strain... [more]
M860_ARATH1.512e-1541.67Uncharacterized mitochondrial protein AtMg00860 OS... [more]
POL_KORV1.672e-1428.24Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol... [more]
POL_GALV3.725e-1427.49Pol polyprotein OS=Gibbon ape leukemia virus GN=po... [more]
POL_MLVFP9.175e-1326.00Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVFF9.175e-1326.00Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVMO1.198e-1226.00Gag-Pol polyprotein OS=Moloney murine leukemia vir... [more]
POL_CERV1.198e-1227.59Enzymatic polyprotein OS=Carnation etched ring vir... [more]
POL_XMRV62.044e-1225.50Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]

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Properties
Property NameValue
Genbank descriptionC03007H05SK OF2 Citrus clementina cDNA clone C03007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291434 ID=CX291434; Name=CX291434; organism=Citrus clementina; type=EST; length=706bp
GTGCCATTTTATGGTCAACAAGGTATTGCCCTCGGTCACATCATTTCAAG
CAAAGGTATTGAGGTTGACAAAGCCAAGGTGGATCTCATTTCTAATCTTC
CTCCACCCAAAACAGTCAGAGAAGTAAGATCTTTCCTTGGGCATGCTGGT
TTCTATAGACGTTTCATTAAAGATTTTAGCAAAGTTTCTAGACCCTTATG
CAATCTACTTGCTAAGGATGTACCTTTTGTCTTTGATGATTCATGTCTTG
TGGCGTTTGAAAAATTAAAGCAGTTGTTGACATCATCACCAATCATTCAG
CCCCCAAACTGGAGCTTACCATTTGAGCTCATGTGTGATGCATCTGATTA
TGCAGTAGGAGCAGTTTTAGGACAAAGAGTTGATCGAATTCCTCATGTTA
TTTACTATGCCAGTATAATATTGAATGATGCACAATTGAACTATTCAACT
ACTGAAAAAGAAATGCTAGCAGTAGTGTTTGCATTGGAAAAATTTCGATC
TTATCTCATTGGTTGTAAAATAGTTATACTCACAGATCATGCTGCTCTTA
AATATCTTCTCACAAAGAAAGATGCAAAAGCTAGACTAATTCGTTGGGTG
TTACTTTTGCAGGAATTTGACTTGGAATTCAAGATAAGAAAGGCACAAAA
ATGTTGTGGCAGACCACTCTCTCGTCTCTATTTTGACCATTACAGAGCCA
TTACAT
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