CX291434

Overview
NameCX291434
Unique NameCX291434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_XMRV4 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  +L + D
Sbjct:  926 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 1125          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  +L + D
Sbjct:  926 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 1125          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVAV (Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  +L + D
Sbjct:  389 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLRKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 588          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVF5 (Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 51/200 (25.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AG  R +I  F++++ PL  L      F +      A++++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  LL + D
Sbjct:  394 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGLCRLWIPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDVGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 593          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 51/200 (25.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621
            LG+++      + +A+ + +   P PKT R++R FLG AGF R +I  F++++ PL  L      F +      A+ ++KQ L ++P +  P+ + PFEL  D        VL Q++      + Y S  L+     +    + + A+    +      +G  +VIL  HA    +    D   + AR+  +  +L + D
Sbjct:  389 LGYLLREGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPRFAEMAAPLYPLTKTGTLFNWGPDQQKAYHEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 588          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   43 ISSKGIEVDKAK-------VDLISNLPPP-KTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQR-VDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLL---TKKDAK-ARLIRW 597
            I+  G+E+DK         ++ I   P   +  + ++ FLG   +   +I   +++ +PL   L KDV + +  S     +K+K+ L S P +  P       +  DASD   G VL  R +D +  +  Y+S     A+ NY + +KE+LAV   + KF +YL   +  + TD+    Y L    K D+K  RL+RW
Sbjct:  438 INFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRW 635          
The following BLAST results are available for this feature:
BLAST of CX291434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
POL_XMRV42.044e-1225.50Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]
POL_XMRV32.044e-1225.50Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]
POL_MLVAV2.669e-1225.50Pol polyprotein OS=AKV murine leukemia virus GN=po... [more]
POL_MLVF53.486e-1225.50Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVRD5.947e-1225.50Pol polyprotein OS=Radiation murine leukemia virus... [more]
POL_FMVD1.730e-1129.29Enzymatic polyprotein OS=Figwort mosaic virus (str... [more]

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Properties
Property NameValue
Genbank descriptionC03007H05SK OF2 Citrus clementina cDNA clone C03007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291434 ID=CX291434; Name=CX291434; organism=Citrus clementina; type=EST; length=706bp
GTGCCATTTTATGGTCAACAAGGTATTGCCCTCGGTCACATCATTTCAAG
CAAAGGTATTGAGGTTGACAAAGCCAAGGTGGATCTCATTTCTAATCTTC
CTCCACCCAAAACAGTCAGAGAAGTAAGATCTTTCCTTGGGCATGCTGGT
TTCTATAGACGTTTCATTAAAGATTTTAGCAAAGTTTCTAGACCCTTATG
CAATCTACTTGCTAAGGATGTACCTTTTGTCTTTGATGATTCATGTCTTG
TGGCGTTTGAAAAATTAAAGCAGTTGTTGACATCATCACCAATCATTCAG
CCCCCAAACTGGAGCTTACCATTTGAGCTCATGTGTGATGCATCTGATTA
TGCAGTAGGAGCAGTTTTAGGACAAAGAGTTGATCGAATTCCTCATGTTA
TTTACTATGCCAGTATAATATTGAATGATGCACAATTGAACTATTCAACT
ACTGAAAAAGAAATGCTAGCAGTAGTGTTTGCATTGGAAAAATTTCGATC
TTATCTCATTGGTTGTAAAATAGTTATACTCACAGATCATGCTGCTCTTA
AATATCTTCTCACAAAGAAAGATGCAAAAGCTAGACTAATTCGTTGGGTG
TTACTTTTGCAGGAATTTGACTTGGAATTCAAGATAAGAAAGGCACAAAA
ATGTTGTGGCAGACCACTCTCTCGTCTCTATTTTGACCATTACAGAGCCA
TTACAT
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