CX291434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_XMRV4 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + +L + D Sbjct: 926 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 1125
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + +L + D Sbjct: 926 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 1125
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVAV (Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + +L + D Sbjct: 389 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLRKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 588
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVF5 (Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 51/200 (25.50%), Postives = 92/200 (46.00%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AG R +I F++++ PL L F + A++++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + LL + D Sbjct: 394 LGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGLCRLWIPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDVGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 593
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12 Identity = 51/200 (25.50%), Postives = 92/200 (46.00%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKD---AKARLIRWVLLLQEFD 621 LG+++ + +A+ + + P PKT R++R FLG AGF R +I F++++ PL L F + A+ ++KQ L ++P + P+ + PFEL D VL Q++ + Y S L+ + + + A+ + +G +VIL HA + D + AR+ + +L + D Sbjct: 389 LGYLLREGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPRFAEMAAPLYPLTKTGTLFNWGPDQQKAYHEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTD 588
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11 Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 43 ISSKGIEVDKAK-------VDLISNLPPP-KTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQR-VDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLL---TKKDAK-ARLIRW 597 I+ G+E+DK ++ I P + + ++ FLG + +I +++ +PL L KDV + + S +K+K+ L S P + P + DASD G VL R +D + + Y+S A+ NY + +KE+LAV + KF +YL + + TD+ Y L K D+K RL+RW Sbjct: 438 INFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRW 635 The following BLAST results are available for this feature:
BLAST of CX291434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291434 ID=CX291434; Name=CX291434; organism=Citrus clementina; type=EST; length=706bpback to top |